Rmu_sc0003458.1_g000012

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003458.1
OG0000486
Physical Location & Seq
Forward (+)
51156 .. 53864
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003458.1_g000012.1.cds

Sequence Viewer

Length: 1194 bp
atgaagcctcaagtgccgccgttcgaaagtcctcaaccccaagacttgttgggaacacacaagattcacagctcaggtgcctgccatgtcgagttcccgacttggtgtgtagccaatccatcattaggttatgatacttcggaaaacgtggaaagctatgcatgcaattacgtggattgctcttcgattcacagtggagatccatgctctgtcccctcgaacttgtttagtcgtgcatcctttgccatgaatgcttactaccaacagggacatgattgcacatttggtggctctggactcaaatctattactgatccaagctacggaaactacaaatttgtaggttcagaagaaatgatttctgctccagcagctctgagtaaatggtgtattgcaaagccaactgccccttacagtttactacaaatgaacattgacttcgcttgtagtcaagtcgactgtagcgtaattcaaaccggtggtgaatgccaattaccagacactataatgaaccacgcgtctgttgccatgaatctttactaccaatcatttggcagaacagatttgagctatcatttcaagtcgaccgacatgattgtgattgacgatccaagttttggaacttgtttgtacaaaagaaaagggaaggaaggaggtgctgggactgtaactgttgtgtgcgtgtgccagcgttctcggaatccctcacaagcaataaaaagtgagatgcaacacatgccaaccccagccccctctcaatcccagccacagccatcatgttcagtgacggtatcagttccctgtcagacggtatcagttcctctcagtccccctcccggtccttctcaaacacaacccaagaaagacaacggccaacttgacattgttatttcaggtaatcaagtcaatggaaacaaaggagaccataatggacagttctccgttggcaacactatacacaagactgtccatatcagcattgatagaattaatgttttcctgctccatccacgaaaagttcgcgaagtgagtttgctaaagtgtgttcgcgagatgaagtcaccacggcgaaatgttcgcgagatgaagtcaccgcgacgaaatgttcgcaaggtaagttggtcgcgaaggttcgctaaagagcgctcgccagatgacgtcactgcggggaatagtaagtcgcgagtttgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

397

Amino Acids

43.51

Weight (kDa)

8.76

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1161
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 617
AccI GTMKAC 2 cut(s) 456, 584
AccII CGCG 7 cut(s) 518, 1023, 1050, 1080, 1096, 1126, 1183
AciI CCGC 3 cut(s) 17, 1094, 1166
AclWI GGATC 3 cut(s) 194, 308, 602
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 1158
AfaI GTAC 1 cut(s) 632
AfeI AGCGCT 1 cut(s) 1145
AfiI CCNNNNNNNGG 4 cut(s) 125, 323, 617, 836
AflIII ACRYGT 1 cut(s) 516
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 2 cut(s) 473, 580
AluBI AGCT 5 cut(s) 72, 156, 321, 374, 570
AluI AGCT 5 cut(s) 72, 156, 321, 374, 570
Alw26I GTCTC 1 cut(s) 915
AlwI GGATC 3 cut(s) 194, 308, 602
Aor51HI AGCGCT 1 cut(s) 1145
AoxI GGCC 1 cut(s) 871
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 1089, 1121
AseI ATTAAT 1 cut(s) 990
AsiGI ACCGGT 1 cut(s) 476
AspLEI GCGC 1 cut(s) 1146
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 3 cut(s) 494, 1053, 1083
AsuII TTCGAA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 839
BanI GGYRCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 383
BccI CCATC 3 cut(s) 127, 781, 1014
BceAI ACGGC 3 cut(s) 4, 886, 1082
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 1 cut(s) 915
BfmI CTRYAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 1147
BisI GCNGC 2 cut(s) 17, 372
BlsI GCNGC 2 cut(s) 18, 373
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 837
BmsI GCATC 2 cut(s) 245, 717
BpmI CTGGAG 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 837
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 1158
BsaI GGTCTC 1 cut(s) 915
BsaJI CCNNGG 1 cut(s) 1064
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 323, 617, 836
Bse118I RCCGGY 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 1064
BseGI GGATG 2 cut(s) 236, 1006
BseLI CCNNNNNNNGG 4 cut(s) 125, 323, 617, 836
BseMII CTCAG 3 cut(s) 87, 368, 838
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 3 cut(s) 659, 745, 762
Bsh1236I CGCG 7 cut(s) 518, 1023, 1050, 1080, 1096, 1126, 1183
Bsh1285I CGRYCG 1 cut(s) 588
BshFI GGCC 1 cut(s) 873
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 588
BsiSI CCGG 2 cut(s) 477, 837
BslFI GGGAC 4 cut(s) 197, 282, 676, 813
BslI CCNNNNNNNGG 4 cut(s) 125, 323, 617, 836
BsmAI GTCTC 1 cut(s) 915
BsmFI GGGAC 4 cut(s) 197, 282, 676, 813
BsmI GAATGC 2 cut(s) 256, 491
BsnI GGCC 1 cut(s) 873
Bso31I GGTCTC 1 cut(s) 915
Bsp119I TTCGAA 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 3 cut(s) 199, 313, 607
Bsp68I TCGCGA 5 cut(s) 1023, 1050, 1080, 1126, 1183
BspACI CCGC 3 cut(s) 17, 1094, 1166
BspANI GGCC 1 cut(s) 873
BspCNI CTCAG 3 cut(s) 86, 369, 837
BspFNI CGCG 7 cut(s) 518, 1023, 1050, 1080, 1096, 1126, 1183
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 3 cut(s) 194, 308, 602
BspQI GCTCTTC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 915
BsrFI RCCGGY 1 cut(s) 476
BsrGI TGTACA 1 cut(s) 630
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 1064
BssMI GATC 3 cut(s) 199, 313, 607
BssNI GRCGYC 1 cut(s) 1158
Bst4CI ACNGT 9 cut(s) 194, 416, 461, 667, 673, 790, 811, 936, 967
Bst6I CTCTTC 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 1158
BstAPI GCANNNNNTGC 2 cut(s) 242, 736
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 4 cut(s) 82, 163, 689, 1148
BstDEI CTNAG 3 cut(s) 73, 377, 824
BstDSI CCRYGG 1 cut(s) 1064
BstF5I GGATG 2 cut(s) 236, 1006
BstFNI CGCG 7 cut(s) 518, 1023, 1050, 1080, 1096, 1126, 1183
BstH2I RGCGCY 1 cut(s) 1147
BstHHI GCGC 1 cut(s) 1146
BstKTI GATC 3 cut(s) 202, 316, 610
BstMAI GTCTC 1 cut(s) 915
BstMBI GATC 3 cut(s) 199, 313, 607
BstMCI CGRYCG 1 cut(s) 588
BstMWI GCNNNNNNNGC 7 cut(s) 13, 162, 242, 251, 371, 524, 736
BstNSI RCATGY 2 cut(s) 165, 739
BstSCI CCNGG 1 cut(s) 835
BstSFI CTRYAG 1 cut(s) 460
BstUI CGCG 7 cut(s) 518, 1023, 1050, 1080, 1096, 1126, 1183
BstV1I GCAGC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 873
BtgI CCRYGG 1 cut(s) 1064
BtsCI GGATG 2 cut(s) 236, 1006
BtsI GCAGTG 1 cut(s) 1161
BtsIMutI CAGTG 3 cut(s) 199, 789, 1161
BtuMI TCGCGA 5 cut(s) 1023, 1050, 1080, 1126, 1183
Cac8I GCNNGC 4 cut(s) 82, 163, 689, 1148
CfoI GCGC 1 cut(s) 1146
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 839
CseI GACGC 1 cut(s) 507
Csp6I GTAC 1 cut(s) 631
CspAI ACCGGT 1 cut(s) 476
CviAII CATG 9 cut(s) 86, 162, 204, 247, 272, 529, 592, 736, 777
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 3 cut(s) 73, 377, 824
DpnI GATC 3 cut(s) 201, 315, 609
DpnII GATC 3 cut(s) 199, 313, 607
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 915
Eco47I GGWCC 1 cut(s) 839
Eco47III AGCGCT 1 cut(s) 1145
EcoT22I ATGCAT 1 cut(s) 163
FaeI CATG 9 cut(s) 89, 165, 207, 250, 275, 532, 595, 739, 780
FaqI GGGAC 4 cut(s) 197, 282, 676, 813
FatI CATG 9 cut(s) 85, 161, 203, 246, 271, 528, 591, 735, 776
FauI CCCGC 1 cut(s) 1159
FblI GTMKAC 2 cut(s) 456, 584
Fnu4HI GCNGC 2 cut(s) 17, 372
FokI GGATG 2 cut(s) 223, 993
Fsp4HI GCNGC 2 cut(s) 17, 372
GlaI GCGC 1 cut(s) 1145
GluI GCNGC 2 cut(s) 17, 372
GsaI CCCAGC 3 cut(s) 663, 749, 766
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 1147
HaeIII GGCC 1 cut(s) 873
HapII CCGG 2 cut(s) 477, 837
HgaI GACGC 1 cut(s) 507
HhaI GCGC 1 cut(s) 1146
Hin1I GRCGYC 1 cut(s) 1158
Hin1II CATG 9 cut(s) 89, 165, 207, 250, 275, 532, 595, 739, 780
Hin6I GCGC 1 cut(s) 1144
HinP1I GCGC 1 cut(s) 1144
HincII GTYRAC 2 cut(s) 457, 585
HindII GTYRAC 2 cut(s) 457, 585
HinfI GANTC 5 cut(s) 64, 187, 297, 532, 700
HpaII CCGG 2 cut(s) 477, 837
HphI GGTGA 3 cut(s) 494, 1053, 1083
Hpy166II GTNNAC 3 cut(s) 419, 457, 585
Hpy188I TCNGA 5 cut(s) 142, 349, 378, 699, 807
Hpy188III TCNNGA 7 cut(s) 97, 294, 1022, 1049, 1079, 1125, 1182
Hpy8I GTNNAC 3 cut(s) 419, 457, 585
Hpy99I CGWCG 1 cut(s) 1101
HpyAV CCTTC 4 cut(s) 640, 644, 852, 1122
HpyCH4III ACNGT 9 cut(s) 194, 416, 461, 667, 673, 790, 811, 936, 967
HpyCH4IV ACGT 3 cut(s) 147, 171, 1158
HpyCH4V TGCA 6 cut(s) 161, 165, 236, 279, 395, 730
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 162, 242, 251, 371, 524, 736
HpyF3I CTNAG 3 cut(s) 73, 377, 824
HpySE526I ACGT 3 cut(s) 147, 171, 1158
Hsp92I GRCGYC 1 cut(s) 1158
Hsp92II CATG 9 cut(s) 89, 165, 207, 250, 275, 532, 595, 739, 780
HspAI GCGC 1 cut(s) 1144
Kzo9I GATC 3 cut(s) 199, 313, 607
LguI GCTCTTC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 370, 1008
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 245, 717
MaeII ACGT 3 cut(s) 147, 171, 1158
MaeIII GTNAC 5 cut(s) 667, 784, 1059, 1089, 1159
MalI GATC 3 cut(s) 201, 315, 609
MboI GATC 3 cut(s) 199, 313, 607
MboII GAAGA 2 cut(s) 174, 362
MflI RGATCY 1 cut(s) 199
MluCI AATT 5 cut(s) 166, 335, 468, 491, 987
MluI ACGCGT 1 cut(s) 516
MlyI GAGTC 1 cut(s) 291
MnlI CCTC 8 cut(s) 18, 42, 226, 647, 715, 763, 831, 843
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 1 cut(s) 990
MslI CAYNNNNRTG 2 cut(s) 506, 596
MspI CCGG 2 cut(s) 477, 837
MspR9I CCNGG 1 cut(s) 837
Mva1269I GAATGC 2 cut(s) 256, 491
MvnI CGCG 7 cut(s) 518, 1023, 1050, 1080, 1096, 1126, 1183
MwoI GCNNNNNNNGC 7 cut(s) 13, 162, 242, 251, 371, 524, 736
NciI CCSGG 1 cut(s) 837
NdeII GATC 3 cut(s) 199, 313, 607
NlaIII CATG 9 cut(s) 89, 165, 207, 250, 275, 532, 595, 739, 780
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 4 cut(s) 784, 1059, 1089, 1159
NruI TCGCGA 5 cut(s) 1023, 1050, 1080, 1126, 1183
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 2 cut(s) 165, 739
NspV TTCGAA 1 cut(s) 24
PaeI GCATGC 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PctI GAATGC 2 cut(s) 256, 491
PfeI GAWTC 4 cut(s) 64, 187, 532, 700
PflMI CCANNNNNTGG 1 cut(s) 617
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 2 cut(s) 18, 373
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
Ppu21I YACGTR 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 990
PspFI CCCAGC 3 cut(s) 659, 745, 762
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 839
PsuI RGATCY 1 cut(s) 199
RruI TCGCGA 5 cut(s) 1023, 1050, 1080, 1126, 1183
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
RseI CAYNNNNRTG 2 cut(s) 506, 596
SalI GTCGAC 2 cut(s) 455, 583
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 2 cut(s) 17, 372
Sau3AI GATC 3 cut(s) 199, 313, 607
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 837
SfaNI GCATC 2 cut(s) 245, 717
SfcI CTRYAG 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 24
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 2 cut(s) 506, 596
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SphI GCATGC 1 cut(s) 165
Sse9I AATT 5 cut(s) 166, 335, 468, 491, 987
SsiI CCGC 3 cut(s) 17, 1094, 1166
StyD4I CCNGG 1 cut(s) 835
TaaI ACNGT 9 cut(s) 194, 416, 461, 667, 673, 790, 811, 936, 967
TaiI ACGT 3 cut(s) 150, 174, 1161
TaqI TCGA 6 cut(s) 24, 90, 185, 218, 456, 584
TaqII GACCGA 1 cut(s) 602
TasI AATT 5 cut(s) 166, 335, 468, 491, 987
TatI WGTACW 1 cut(s) 630
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 4 cut(s) 64, 187, 532, 700
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 3 cut(s) 199, 789, 1168
TseFI GTSAC 4 cut(s) 784, 1059, 1089, 1159
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 4 cut(s) 784, 1059, 1089, 1159
TspDTI ATGAA 7 cut(s) 17, 263, 443, 524, 545, 1070, 1100
TspGWI ACGGA 2 cut(s) 339, 931
TspRI CASTG 3 cut(s) 199, 789, 1168
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 839
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 1 cut(s) 335
XceI RCATGY 2 cut(s) 165, 739
XmiI GTMKAC 2 cut(s) 456, 584
ZraI GACGTC 1 cut(s) 1159
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.