AT4G09466

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000486
Physical Location & Seq
Forward (+)
6003632 .. 6004167
536 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09466.1

Sequence Viewer

Length: 351 bp
ATGGCCAAAATATCATCACCTTTGGCTCTCTTATTCATCATGTTATCTTCCATCATGATCAACCATATCCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGAATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAATCCGACCTGATGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGATGAACTCTTATTATCAGACCCATGGTCGTACCAATCAGATATGTAGTTTCAAAAATACCGGCACATTTGCTGCTACCAATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

9.08

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 30 - 101 7e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 90
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 90, 326
AgsI TTSAA 1 cut(s) 289
AhdI GACNNNNNGTC 1 cut(s) 261
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 1 cut(s) 199
AoxI GGCC 2 cut(s) 3, 173
ApeKI GCWGC 3 cut(s) 124, 127, 308
AseI ATTAAT 1 cut(s) 141
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 9
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 114, 136, 295
BccI CCATC 2 cut(s) 59, 182
BclI TGATCA 1 cut(s) 57
BfaI CTAG 1 cut(s) 321
BisI GCNGC 3 cut(s) 125, 128, 309
BlsI GCNGC 3 cut(s) 126, 129, 310
BmeRI GACNNNNNGTC 1 cut(s) 261
BmsI GCATC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 326
Bse118I RCCGGY 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 90, 326
BseXI GCAGC 3 cut(s) 114, 136, 295
BshFI GGCC 2 cut(s) 5, 175
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 90, 326
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 2 cut(s) 5, 175
Bsp143I GATC 2 cut(s) 57, 191
Bsp19I CCATGG 1 cut(s) 259
BspANI GGCC 2 cut(s) 5, 175
BspHI TCATGA 1 cut(s) 54
BspPI GGATC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 57, 191
BssT1I CCWWGG 1 cut(s) 259
BstAPI GCANNNNNTGC 2 cut(s) 119, 224
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 60, 194
BstMBI GATC 2 cut(s) 57, 191
BstMWI GCNNNNNNNGC 2 cut(s) 119, 224
BstNSI RCATGY 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 114, 136, 295
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 5, 175
BtgI CCRYGG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 267
CviAII CATG 7 cut(s) 40, 55, 71, 90, 150, 224, 260
CviJI RGCY 4 cut(s) 5, 26, 127, 175
CviKI_1 RGCY 4 cut(s) 5, 26, 127, 175
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 59, 193
DpnII GATC 2 cut(s) 57, 191
DriI GACNNNNNGTC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 7 cut(s) 43, 58, 74, 93, 153, 227, 263
FatI CATG 7 cut(s) 39, 54, 70, 89, 149, 223, 259
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 125, 128, 309
Fsp4HI GCNGC 3 cut(s) 125, 128, 309
FspBI CTAG 1 cut(s) 321
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 1 cut(s) 123
GluI GCNGC 3 cut(s) 125, 128, 309
HaeIII GGCC 2 cut(s) 5, 175
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 124
Hin1II CATG 7 cut(s) 43, 58, 74, 93, 153, 227, 263
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 182, 255, 276
Hpy188III TCNNGA 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 130, 149, 218, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 224
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 7 cut(s) 43, 58, 74, 93, 153, 227, 263
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 191
LpnPI CCDG 2 cut(s) 198, 310
Lsp1109I GCAGC 3 cut(s) 114, 136, 295
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 321
MalI GATC 2 cut(s) 59, 193
MboI GATC 2 cut(s) 57, 191
MboII GAAGA 1 cut(s) 39
MflI RGATCY 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 142
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 205
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 229
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 119, 224
NcoI CCATGG 1 cut(s) 259
NdeII GATC 2 cut(s) 57, 191
NlaIII CATG 7 cut(s) 43, 58, 74, 93, 153, 227, 263
NsbI TGCGCA 1 cut(s) 123
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 153
PagI TCATGA 1 cut(s) 54
PctI GAATGC 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 3 cut(s) 126, 129, 310
PshBI ATTAAT 1 cut(s) 141
PsuI RGATCY 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 3 cut(s) 125, 128, 309
Sau3AI GATC 2 cut(s) 57, 191
SetI ASST 3 cut(s) 22, 129, 187
SfaNI GCATC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 1 cut(s) 142
SspI AATATT 1 cut(s) 139
SspMI CTAG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 259
TasI AATT 1 cut(s) 142
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 3 cut(s) 124, 127, 308
TspDTI ATGAA 2 cut(s) 25, 254
Van91I CCANNNNNTGG 1 cut(s) 90
VspI ATTAAT 1 cut(s) 141
XceI RCATGY 1 cut(s) 153
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.