Rroxscaffold_1G00063160

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000486
Physical Location & Seq
Reverse (-)
85112751 .. 85115197
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063160.1

Sequence Viewer

Length: 897 bp
ATGGTGTTCATTATCGCCCTCCAATTCTATGCTGCAATGGCCAAGTTTATTACCCTTTGCACTCTTGCAGCCTTTTTGCTCTCTCTCCATGCTCATGCTGCTTCTCTAGGAGATAGTCATACTCTGTCCACGACAGAGACTGCAGAGACTTGGTGTGTCCCCAATCCATCGTTGACCTATAAGAATCTGCAAGAGATAGAAACCTTTGCTTGCAATTATGTGGATTGCTCTTCAATTCACAGTGGGGGTCCATGCTTCAACCCCTTGAACGCCTTTAGTCATGCAGCCTTTGCCATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATTACTGATCCAAGCTATGGGAATTGTCATTTTGCAGGTAGAGAAGAGATGGTTTCCTCTTCAGCAGCTCTGAATACATGGTGTGTGGCAAAGCCGGCTGCCACTGACAATTTGCTACAATTGAACATTGACTTTGCTTGTAGTCATGTCAACTGTAGTGTCATTGAACCCGGTGGTGAATGCCAATTACAAGACACTATGATGAACCATGCATCTGTAGCCATGAATCTCTTCTACCAATCTTCTGGCAGAACAGATTCGAGTTGTTATTTCAACTCGACTGGCATGAATGTGATTAAAGATCCAAGTTCTGGAAGTTGTGTCTATAACGTTGCTGTCCCTGCGAGTCTCAGAACAAAGAAGGGGAAATCTAAAGCTTCTGCAACATTTATTGGACTGATGGTGCTGTGTTTGATCATTGGTTGTGTGCTGCTGGCAGGGGTTGTGTATCTTATCCTCAAGCTTCGTCAGACACCCACAACAGCAGCAGCGGTGGAAACTCCCATGTACAGATTGCAGGAGCCAACAGCTGCCACTCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

298

Amino Acids

32.03

Weight (kDa)

5.95

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 50 - 108 6.9e-14 X8 domain
X8 PF07983 143 - 213 2.7e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AccB7I CCANNNNNTGG 2 cut(s) 368, 662
AciI CCGC 1 cut(s) 842
AclI AACGTT 1 cut(s) 681
AclWI GGATC 2 cut(s) 353, 647
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 2 cut(s) 368, 662
AgsI TTSAA 6 cut(s) 234, 259, 268, 475, 518, 625
AluBI AGCT 5 cut(s) 366, 419, 728, 814, 881
AluI AGCT 5 cut(s) 366, 419, 728, 814, 881
Alw26I GTCTC 3 cut(s) 131, 140, 704
AlwI GGATC 2 cut(s) 353, 647
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 39
Asp700I GAANNNNTTC 2 cut(s) 581, 607
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 1 cut(s) 248
BalI TGGCCA 1 cut(s) 41
BccI CCATC 3 cut(s) 175, 394, 745
BclI TGATCA 1 cut(s) 765
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 3 cut(s) 131, 140, 704
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 3 cut(s) 141, 505, 567
BfuAI ACCTGC 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 249, 873
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 522
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 662
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 2 cut(s) 322, 637
Bse3DI GCAATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 368, 662
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 715
BseNI ACTGG 2 cut(s) 322, 637
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 446, 522
BslFI GGGAC 2 cut(s) 143, 674
BslI CCNNNNNNNGG 2 cut(s) 368, 662
BsmAI GTCTC 3 cut(s) 131, 140, 704
BsmFI GGGAC 2 cut(s) 143, 674
BsmI GAATGC 2 cut(s) 304, 536
BsnI GGCC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 3 cut(s) 358, 652, 765
BspACI CCGC 1 cut(s) 842
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 714
BspLI GGNNCC 2 cut(s) 249, 873
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 2 cut(s) 353, 647
BspQI GCTCTTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 2 cut(s) 322, 637
BssAI RCCGGY 1 cut(s) 445
BssMI GATC 3 cut(s) 358, 652, 765
Bst4CI ACNGT 2 cut(s) 242, 506
Bst6I CTCTTC 5 cut(s) 235, 390, 415, 587, 894
BstAPI GCANNNNNTGC 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 3 cut(s) 211, 447, 786
BstDEI CTNAG 2 cut(s) 701, 894
BstKTI GATC 3 cut(s) 361, 655, 768
BstMAI GTCTC 3 cut(s) 131, 140, 704
BstMBI GATC 3 cut(s) 358, 652, 765
BstMWI GCNNNNNNNGC 7 cut(s) 38, 98, 290, 299, 446, 569, 692
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 3 cut(s) 141, 505, 567
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 2 cut(s) 329, 596
BstYI RGATCY 1 cut(s) 652
BsuRI GGCC 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 247, 329, 453
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 211, 447, 786
CaiI CAGNNNCTG 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 859
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 2 cut(s) 701, 894
DpnI GATC 3 cut(s) 360, 654, 767
DpnII GATC 3 cut(s) 358, 652, 765
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 5 cut(s) 235, 390, 415, 587, 894
EarI CTCTTC 5 cut(s) 235, 390, 415, 587, 894
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 565
FaqI GGGAC 2 cut(s) 143, 674
FbaI TGATCA 1 cut(s) 765
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 41
HapII CCGG 2 cut(s) 446, 522
HincII GTYRAC 2 cut(s) 174, 502
HindII GTYRAC 2 cut(s) 174, 502
HindIII AAGCTT 2 cut(s) 726, 812
HinfI GANTC 5 cut(s) 184, 342, 577, 608, 697
HpaII CCGG 2 cut(s) 446, 522
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 129, 174, 502
Hpy188I TCNGA 3 cut(s) 423, 704, 822
Hpy188III TCNNGA 3 cut(s) 311, 339, 663
Hpy8I GTNNAC 3 cut(s) 129, 174, 502
HpyAV CCTTC 1 cut(s) 706
HpyCH4III ACNGT 2 cut(s) 242, 506
HpyCH4IV ACGT 1 cut(s) 681
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 98, 290, 299, 446, 569, 692
HpyF3I CTNAG 2 cut(s) 701, 894
HpySE526I ACGT 1 cut(s) 681
KroI GCCGGC 1 cut(s) 445
KroNI GCCGGC 1 cut(s) 447
Ksp22I TGATCA 1 cut(s) 765
Kzo9I GATC 3 cut(s) 358, 652, 765
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 313, 871
LweI GCATC 1 cut(s) 572
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 681
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 360, 654, 767
MboI GATC 3 cut(s) 358, 652, 765
MboII GAAGA 6 cut(s) 222, 402, 407, 574, 585, 881
MfeI CAATTG 1 cut(s) 470
MflI RGATCY 1 cut(s) 652
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 7 cut(s) 23, 214, 234, 373, 460, 470, 536
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 2 cut(s) 336, 706
MnlI CCTC 3 cut(s) 29, 418, 818
Mox20I TGGCCA 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 445
MroXI GAANNNNTTC 2 cut(s) 581, 607
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 3 cut(s) 93, 551, 641
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 842, 881
MspI CCGG 2 cut(s) 446, 522
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 470
Mva1269I GAATGC 2 cut(s) 304, 536
MwoI GCNNNNNNNGC 7 cut(s) 38, 98, 290, 299, 446, 569, 692
NaeI GCCGGC 1 cut(s) 447
NciI CCSGG 1 cut(s) 522
NdeII GATC 3 cut(s) 358, 652, 765
NgoMIV GCCGGC 1 cut(s) 445
NlaIV GGNNCC 2 cut(s) 249, 873
NsiI ATGCAT 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 235
PctI GAATGC 2 cut(s) 304, 536
PdiI GCCGGC 1 cut(s) 447
PdmI GAANNNNTTC 2 cut(s) 581, 607
PfeI GAWTC 3 cut(s) 184, 577, 608
PflMI CCANNNNNTGG 2 cut(s) 368, 662
PleI GAGTC 2 cut(s) 336, 705
PpsI GAGTC 2 cut(s) 336, 705
Psp1406I AACGTT 1 cut(s) 681
PspN4I GGNNCC 2 cut(s) 249, 873
PspPI GGNCC 1 cut(s) 248
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 3 cut(s) 93, 551, 641
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 648
Sau3AI GATC 3 cut(s) 358, 652, 765
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 2 cut(s) 336, 706
ScrFI CCNGG 1 cut(s) 522
SetI ASST 9 cut(s) 179, 206, 368, 391, 421, 684, 730, 816, 883
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 3 cut(s) 141, 505, 567
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 3 cut(s) 93, 551, 641
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
Sse9I AATT 7 cut(s) 23, 214, 234, 373, 460, 470, 536
SsiI CCGC 1 cut(s) 842
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 242, 506
TaiI ACGT 1 cut(s) 684
TaqI TCGA 2 cut(s) 611, 629
TasI AATT 7 cut(s) 23, 214, 234, 373, 460, 470, 536
TatI WGTACW 1 cut(s) 858
TfiI GAWTC 3 cut(s) 184, 577, 608
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 3 cut(s) 247, 329, 460
TspDTI ATGAA 4 cut(s) 311, 569, 590, 653
TspRI CASTG 3 cut(s) 247, 329, 460
Van91I CCANNNNNTGG 2 cut(s) 368, 662
VpaK11BI GGWCC 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 581, 607
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.