AT5G63230

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000486
Physical Location & Seq
Reverse (-)
25357360 .. 25357822
463 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63230.1

Sequence Viewer

Length: 336 bp
ATGTCGTCGTTGCAACTTTTAACACTTCTTCTTCTCATATCAACTGTCTCTATCCCCGTCGTGACTTGCAGACAATGGTGTACGCCAATGCCTAATACCTCAGATGAGCAGTTACAAGCCAACATTGATTTTGCTTGCAGCAACGGCGTCGATTGTACACCGATCCAACCCGGTGGGAATTGTTACAACCCTAATACTTTATTTGACCATGCATCGTATGTCATGAACGCTTATTATCATAGCCATGGCCGTGTCGAAGATGCGTGTAGGTTCAACCGTAGTGGTTGTTTTGTTGTTGTCGACCCAAGTAAAGACTCATGTGTCTACTATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

111

Amino Acids

12.32

Weight (kDa)

4.96

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 25 - 95 7.8e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccI GTMKAC 2 cut(s) 300, 324
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 82, 157
AgsI TTSAA 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 171
BbvI GCAGC 1 cut(s) 150
BceAI ACGGC 2 cut(s) 160, 234
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 52
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 2 cut(s) 221, 250
BpuMI CCSGG 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 150
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 155
Bsp143I GATC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 244
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 222
BspPI GGATC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 162
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 46, 278
BstACI GRCGYC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 244
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 136
CciI TCATGA 1 cut(s) 222
CseI GACGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 81, 156
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 4 cut(s) 209, 223, 245, 318
CviJI RGCY 3 cut(s) 119, 243, 249
CviKI_1 RGCY 3 cut(s) 119, 243, 249
CviQI GTAC 2 cut(s) 81, 156
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 212, 226, 248, 321
FaiI YATR 8 cut(s) 38, 210, 219, 224, 240, 246, 319, 330
FatI CATG 4 cut(s) 208, 222, 244, 317
FblI GTMKAC 2 cut(s) 300, 324
Fnu4HI GCNGC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 4 cut(s) 212, 226, 248, 321
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 171
Hpy166II GTNNAC 4 cut(s) 81, 158, 301, 325
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 61, 223
Hpy8I GTNNAC 4 cut(s) 81, 158, 301, 325
Hpy99I CGWCG 3 cut(s) 10, 62, 152
HpyCH4III ACNGT 2 cut(s) 46, 278
HpyCH4V TGCA 4 cut(s) 13, 69, 138, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 4 cut(s) 212, 226, 248, 321
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 1 cut(s) 184
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 2 cut(s) 221, 250
MaeIII GTNAC 3 cut(s) 61, 111, 182
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 3 cut(s) 20, 23, 269
MluCI AATT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 1 cut(s) 109
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 2 cut(s) 20, 334
MslI CAYNNNNRTG 2 cut(s) 243, 249
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 1 cut(s) 244
NdeII GATC 1 cut(s) 162
NlaIII CATG 4 cut(s) 212, 226, 248, 321
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 214
PagI TCATGA 1 cut(s) 222
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
RsaI GTAC 2 cut(s) 82, 157
RsaNI GTAC 2 cut(s) 81, 156
RseI CAYNNNNRTG 2 cut(s) 243, 249
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 20, 334
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 1 cut(s) 162
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 171
SetI ASST 2 cut(s) 101, 272
SfaNI GCATC 2 cut(s) 221, 250
SmiMI CAYNNNNRTG 2 cut(s) 243, 249
Sse9I AATT 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 46, 278
TaqI TCGA 3 cut(s) 150, 255, 300
TasI AATT 1 cut(s) 178
TatI WGTACW 1 cut(s) 155
Tru1I TTAA 2 cut(s) 20, 334
Tru9I TTAA 2 cut(s) 20, 334
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 239
XmiI GTMKAC 2 cut(s) 300, 324
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.