Prupe.4G076700_v2.0.a1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000486
Physical Location & Seq
Forward (+)
3739617 .. 3740908
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G076700.1

Sequence Viewer

Length: 627 bp
ATGGCTAAGCTAGCTCTGCCAGGTCCTGTTATTTCTCTCCTGCTTCTGTTCTTCTTCTCGGGGGAGATTTCGATGTTGGTGAATGGACAGAAAGCTTGGTGTGTGGCAAAGCCTGCAGCACCACAACATGCACTGCAGTCAGCTCTGGACTATGCCTGTAACTATGCGGATTGCAGCCCTACAAAGAAAGGAGGTTCTTGCTATGACCCAGATAGGCCAGTGCACCATGTCTCATTTGCCATGAATGCTTACTACCAGAAGATGGGAAGAAACCAATGGAATTGTCATTTGAACAATACTAGTCTCATTTCCTTGGCAGATCCAAGTTACAATCCCTGCTGCCAATTTATGAGTGGAGGATCTGGACCTCCACTGCCACAGGAACAGGAGGATACTTGGTGTGTGCCTAAGCCAGGAACCCCAGACTCTGCATTACAGAACATCATAAACTTCACTTGTGGAATATTAAAAGAATGCAGTGAAATACAAGAGCATGGTTCATGCTACTTTCCAAATACCCTCATAAACCATGCCCCATTTGCCATGAATCTTTCCTATAAGACCGATGGATGCTACAATTGTGATTTCAATTGCGTTGGCCTTATCGTTGTCACTAATCCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

209

Amino Acids

22.73

Weight (kDa)

5.79

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 1 cut(s) 167
AclWI GGATC 2 cut(s) 314, 367
AfiI CCNNNNNNNGG 2 cut(s) 262, 413
AgsI TTSAA 2 cut(s) 292, 589
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 2 cut(s) 19, 412
AluBI AGCT 4 cut(s) 10, 14, 95, 143
AluI AGCT 4 cut(s) 10, 14, 95, 143
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 235, 308
Alw44I GTGCAC 1 cut(s) 221
AlwI GGATC 2 cut(s) 314, 367
AlwNI CAGNNNCTG 2 cut(s) 26, 428
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 2 cut(s) 215, 598
ApaLI GTGCAC 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 116, 174, 339
AspS9I GGNCC 2 cut(s) 23, 365
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 2 cut(s) 23, 365
BaeGI GKGCMC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 128, 186, 326
BccI CCATC 2 cut(s) 256, 560
BciT130I CCWGG 2 cut(s) 21, 414
BciVI GTATCC 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 235, 308
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 2 cut(s) 11, 300
BfmI CTRYAG 2 cut(s) 114, 134
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 3 cut(s) 117, 175, 340
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 3 cut(s) 118, 176, 341
Bme1390I CCNGG 2 cut(s) 21, 414
Bme18I GGWCC 2 cut(s) 23, 365
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 23, 365
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 21, 414
BmsI GCATC 1 cut(s) 560
BmtI GCTAGC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 413
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 2 cut(s) 21, 414
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 575
BseLI CCNNNNNNNGG 2 cut(s) 262, 413
BseNI ACTGG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 3 cut(s) 128, 186, 326
BshFI GGCC 2 cut(s) 217, 600
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 262, 413
BsmAI GTCTC 2 cut(s) 235, 308
BsmI GAATGC 2 cut(s) 250, 479
BsnI GGCC 2 cut(s) 217, 600
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 319, 359
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 167
BspANI GGCC 2 cut(s) 217, 600
BspLI GGNNCC 1 cut(s) 418
BspMAI CTGCAG 2 cut(s) 118, 138
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 2 cut(s) 314, 367
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 319, 359
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 21, 414
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 12, 114
BstDEI CTNAG 2 cut(s) 6, 408
BstENI CCTNNNNNAGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 575
BstKTI GATC 2 cut(s) 322, 362
BstMAI GTCTC 2 cut(s) 235, 308
BstMBI GATC 2 cut(s) 319, 359
BstMWI GCNNNNNNNGC 5 cut(s) 11, 16, 113, 245, 539
BstNI CCWGG 2 cut(s) 21, 414
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 19, 412
BstSFI CTRYAG 2 cut(s) 114, 134
BstSLI GKGCMC 1 cut(s) 225
BstV1I GCAGC 3 cut(s) 128, 186, 326
BstX2I RGATCY 2 cut(s) 319, 359
BstYI RGATCY 2 cut(s) 319, 359
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 2 cut(s) 217, 600
BtsCI GGATG 1 cut(s) 575
BtsI GCAGTG 3 cut(s) 131, 371, 484
BtsIMutI CAGTG 4 cut(s) 131, 225, 371, 484
Cac8I GCNNGC 2 cut(s) 12, 114
CaiI CAGNNNCTG 2 cut(s) 26, 428
Cfr13I GGNCC 2 cut(s) 23, 365
CviAII CATG 7 cut(s) 128, 227, 241, 494, 501, 530, 544
DdeI CTNAG 2 cut(s) 6, 408
DpnI GATC 2 cut(s) 321, 361
DpnII GATC 2 cut(s) 319, 359
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 23, 365
Eco88I CYCGRG 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 19, 412
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 7 cut(s) 131, 230, 244, 497, 504, 533, 547
FatI CATG 7 cut(s) 127, 226, 240, 493, 500, 529, 543
Fnu4HI GCNGC 3 cut(s) 117, 175, 340
FokI GGATG 1 cut(s) 582
Fsp4HI GCNGC 3 cut(s) 117, 175, 340
FspBI CTAG 2 cut(s) 11, 300
GluI GCNGC 3 cut(s) 117, 175, 340
HaeIII GGCC 2 cut(s) 217, 600
Hin1II CATG 7 cut(s) 131, 230, 244, 497, 504, 533, 547
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 2 cut(s) 425, 547
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 223
Hpy188III TCNNGA 2 cut(s) 146, 363
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4V TGCA 7 cut(s) 116, 131, 136, 174, 223, 431, 477
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 16, 113, 245, 539
HpyF3I CTNAG 2 cut(s) 6, 408
Hsp92II CATG 7 cut(s) 131, 230, 244, 497, 504, 533, 547
Kzo9I GATC 2 cut(s) 319, 359
Lsp1109I GCAGC 3 cut(s) 128, 186, 326
LweI GCATC 1 cut(s) 560
MaeI CTAG 2 cut(s) 11, 300
MaeIII GTNAC 3 cut(s) 158, 326, 610
MalI GATC 2 cut(s) 321, 361
MboI GATC 2 cut(s) 319, 359
MboII GAAGA 4 cut(s) 43, 46, 271, 279
MfeI CAATTG 2 cut(s) 577, 589
MflI RGATCY 2 cut(s) 319, 359
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 4 cut(s) 280, 344, 577, 589
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 5 cut(s) 185, 350, 378, 382, 530
MseI TTAA 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 21, 414
MunI CAATTG 2 cut(s) 577, 589
Mva1269I GAATGC 2 cut(s) 250, 479
MvaI CCWGG 2 cut(s) 21, 414
MwoI GCNNNNNNNGC 5 cut(s) 11, 16, 113, 245, 539
NdeII GATC 2 cut(s) 319, 359
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 7 cut(s) 131, 230, 244, 497, 504, 533, 547
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 131
PctI GAATGC 2 cut(s) 250, 479
PfeI GAWTC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 3 cut(s) 118, 176, 341
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 19, 412
PspGI CCWGG 2 cut(s) 19, 412
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 2 cut(s) 23, 365
PspPPI RGGWCCY 1 cut(s) 23
PstI CTGCAG 2 cut(s) 118, 138
PstNI CAGNNNCTG 2 cut(s) 26, 428
PsuI RGATCY 2 cut(s) 319, 359
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 3 cut(s) 117, 175, 340
Sau3AI GATC 2 cut(s) 319, 359
Sau96I GGNCC 2 cut(s) 23, 365
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 2 cut(s) 21, 414
SduI GDGCHC 1 cut(s) 225
SetI ASST 7 cut(s) 12, 16, 25, 97, 145, 196, 370
SfaNI GCATC 1 cut(s) 560
SfcI CTRYAG 2 cut(s) 114, 134
SinI GGWCC 2 cut(s) 23, 365
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 4 cut(s) 280, 344, 577, 589
SsiI CCGC 1 cut(s) 167
SspI AATATT 1 cut(s) 465
SspMI CTAG 2 cut(s) 11, 300
StyD4I CCNGG 2 cut(s) 19, 412
StyI CCWWGG 1 cut(s) 312
TaqI TCGA 1 cut(s) 71
TaqII GACCGA 1 cut(s) 578
TasI AATT 4 cut(s) 280, 344, 577, 589
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 4 cut(s) 138, 225, 378, 484
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 116, 174, 339
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 257, 489, 560
TspRI CASTG 4 cut(s) 138, 225, 378, 484
Van91I CCANNNNNTGG 1 cut(s) 262
VneI GTGCAC 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 23, 365
XagI CCTNNNNNAGG 1 cut(s) 411
XceI RCATGY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 2 cut(s) 11, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.