Prupe.6G294200_v2.0.a1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000486
Physical Location & Seq
Reverse (-)
27001528 .. 27003575
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G294200.1

Sequence Viewer

Length: 630 bp
ATGGCTAAGCTAGCTCTGCCAGTTCCTGTTATTTCTCTCCTGCTTCTGTTCTTCTTCTCGGGGGAGATTTCGATGTTGGTGAATGGACAGTCAGCTCTGGACTATGCCTGTAACTATGCGGATTGCAGCCCTACAAAGAAAGGAGGTTCTTGCTATGACCCGGATAGGCCAGTGCACCATGCCTCATTTGCCATGAATGCTTACTACCAGAAGATGGGAAGAAACCAATGGAATTGTCATTTTAACAATACTAGTCTCATTTCCTTGGCAGATCCAAGTTACAATCCCTGCTGCCAATTTGTGAGTGGAGGATCTGGACCTCCACTGCCACAGGAAAAGGAGGATACTTGGTGTGTGCCTAAGCCAGGAACCCCAGACTCTGAATTACAAAACATCATAAACTTCACTTGTGGAATATTAAAAGAATGCAGTGAAATACTAGAACATGGTTCATGCTACTTTCCAAATACCCTCATACACCATGCCTCATTTGCCATGAATCTTTACTATAAGACCGATGGACGCTACAATTGTGATTTCAATGGTGTTGGCCTTATCGTTGTCACTAATCCAAGTTTTGGTGACTGTATCTATGTCTGTGTCTGCCCAAAAGGAAAATGGAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

210

Amino Acids

23.12

Weight (kDa)

6.03

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 214, 578
AciI CCGC 1 cut(s) 119
AclWI GGATC 2 cut(s) 266, 319
AfiI CCNNNNNNNGG 3 cut(s) 214, 365, 578
AgsI TTSAA 1 cut(s) 541
AhlI ACTAGT 1 cut(s) 251
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 10, 14, 95
AluI AGCT 3 cut(s) 10, 14, 95
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 260
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 2 cut(s) 266, 319
AlwNI CAGNNNCTG 2 cut(s) 26, 380
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 2 cut(s) 167, 550
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 126, 291
AspS9I GGNCC 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 91, 593
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 138, 278
BccI CCATC 2 cut(s) 208, 512
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 337
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 260
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 3 cut(s) 11, 252, 440
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 2 cut(s) 127, 292
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 128, 293
Bme1390I CCNGG 2 cut(s) 161, 366
Bme18I GGWCC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 161, 366
BmtI GCTAGC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 365, 578
Bse1I ACTGG 2 cut(s) 20, 170
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 3 cut(s) 214, 365, 578
BseNI ACTGG 2 cut(s) 20, 170
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 2 cut(s) 138, 278
BshFI GGCC 2 cut(s) 169, 552
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 214, 365, 578
BsmAI GTCTC 1 cut(s) 260
BsmI GAATGC 2 cut(s) 202, 431
BsnI GGCC 2 cut(s) 169, 552
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 271, 311
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 119
BspANI GGCC 2 cut(s) 169, 552
BspLI GGNNCC 1 cut(s) 370
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 2 cut(s) 266, 319
BsrI ACTGG 2 cut(s) 20, 170
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 271, 311
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 3 cut(s) 90, 587, 627
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 6, 360
BstENI CCTNNNNNAGG 1 cut(s) 363
BstKTI GATC 2 cut(s) 274, 314
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 271, 311
BstMWI GCNNNNNNNGC 5 cut(s) 11, 16, 188, 197, 491
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 2 cut(s) 159, 364
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 138, 278
BstX2I RGATCY 2 cut(s) 271, 311
BstYI RGATCY 2 cut(s) 271, 311
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 2 cut(s) 169, 552
BtsI GCAGTG 2 cut(s) 323, 436
BtsIMutI CAGTG 3 cut(s) 177, 323, 436
Cac8I GCNNGC 1 cut(s) 12
CaiI CAGNNNCTG 2 cut(s) 26, 380
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 1 cut(s) 531
CviAII CATG 6 cut(s) 179, 193, 446, 453, 482, 496
CviJI RGCY 8 cut(s) 5, 10, 14, 95, 129, 169, 364, 552
CviKI_1 RGCY 8 cut(s) 5, 10, 14, 95, 129, 169, 364, 552
DdeI CTNAG 2 cut(s) 6, 360
DpnI GATC 2 cut(s) 273, 313
DpnII GATC 2 cut(s) 271, 311
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 6 cut(s) 182, 196, 449, 456, 485, 499
FatI CATG 6 cut(s) 178, 192, 445, 452, 481, 495
Fnu4HI GCNGC 2 cut(s) 127, 292
Fsp4HI GCNGC 2 cut(s) 127, 292
FspBI CTAG 3 cut(s) 11, 252, 440
GluI GCNGC 2 cut(s) 127, 292
HaeIII GGCC 2 cut(s) 169, 552
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 531
Hin1II CATG 6 cut(s) 182, 196, 449, 456, 485, 499
HinfI GANTC 2 cut(s) 377, 499
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 91, 593
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 2 cut(s) 98, 315
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4III ACNGT 3 cut(s) 90, 587, 627
HpyCH4V TGCA 3 cut(s) 126, 175, 429
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 16, 188, 197, 491
HpyF3I CTNAG 2 cut(s) 6, 360
Hsp92II CATG 6 cut(s) 182, 196, 449, 456, 485, 499
Kzo9I GATC 2 cut(s) 271, 311
Lsp1109I GCAGC 2 cut(s) 138, 278
MaeI CTAG 3 cut(s) 11, 252, 440
MaeIII GTNAC 4 cut(s) 110, 278, 562, 581
MalI GATC 2 cut(s) 273, 313
MboI GATC 2 cut(s) 271, 311
MboII GAAGA 4 cut(s) 43, 46, 223, 231
MfeI CAATTG 1 cut(s) 529
MflI RGATCY 2 cut(s) 271, 311
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 4 cut(s) 232, 296, 383, 529
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 7 cut(s) 137, 193, 302, 330, 334, 482, 496
MseI TTAA 2 cut(s) 243, 419
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 161, 366
MunI CAATTG 1 cut(s) 529
Mva1269I GAATGC 2 cut(s) 202, 431
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 5 cut(s) 11, 16, 188, 197, 491
NciI CCSGG 1 cut(s) 161
NdeII GATC 2 cut(s) 271, 311
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 6 cut(s) 182, 196, 449, 456, 485, 499
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 562, 581
PctI GAATGC 2 cut(s) 202, 431
PfeI GAWTC 1 cut(s) 499
PflMI CCANNNNNTGG 2 cut(s) 214, 578
PkrI GCNGC 2 cut(s) 128, 293
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 317
PstNI CAGNNNCTG 2 cut(s) 26, 380
PsuI RGATCY 2 cut(s) 271, 311
SaqAI TTAA 2 cut(s) 243, 419
SatI GCNGC 2 cut(s) 127, 292
Sau3AI GATC 2 cut(s) 271, 311
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 161, 366
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 12, 16, 97, 148, 322
SinI GGWCC 1 cut(s) 317
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 4 cut(s) 232, 296, 383, 529
SsiI CCGC 1 cut(s) 119
SspI AATATT 1 cut(s) 417
SspMI CTAG 3 cut(s) 11, 252, 440
StyD4I CCNGG 2 cut(s) 159, 364
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 90, 587, 627
TaqI TCGA 1 cut(s) 71
TaqII GACCGA 1 cut(s) 530
TasI AATT 4 cut(s) 232, 296, 383, 529
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 2 cut(s) 243, 419
Tru9I TTAA 2 cut(s) 243, 419
TscAI CASTG 3 cut(s) 177, 330, 436
TseFI GTSAC 2 cut(s) 562, 581
TseI GCWGC 2 cut(s) 126, 291
Tsp45I GTSAC 2 cut(s) 562, 581
TspDTI ATGAA 3 cut(s) 209, 441, 512
TspRI CASTG 3 cut(s) 177, 330, 436
Van91I CCANNNNNTGG 2 cut(s) 214, 578
VneI GTGCAC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 317
XagI CCTNNNNNAGG 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 2 cut(s) 302, 615
XspI CTAG 3 cut(s) 11, 252, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.