Rmu_sc0003458.1_g000008

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003458.1
OG0000486
Physical Location & Seq
Forward (+)
35278 .. 36188
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003458.1_g000008.1.cds

Sequence Viewer

Length: 504 bp
atgcaatggattccaaggcaattcaagaaggagatccctgctccaaacctaataatcttttgctttatgctttatgcttcatttgccatgaatgcttactaccaggccagggggaggcactactggaactgtgacttcggcaactctggtctcatttccttgacagatccaagttatggtaattgcacatatgaagggggagagacagcgatggatgactcaaattcgggcaactggtgtgtagcaagcccttcagcaagtgatgatcagctacaagcgaacattgagtttgcttgtggcaaggtagactgtagcattataaggtctggtggtacctgtttcgagccaaacactgtcaagaaccgcgcctcaattgccgtgaatctttactatcaccaaacaggtgaagcagatacgagttgtgattttaatggcagtggtaacattgttagaaccgatctaagttatggagattgcaaattcaagggtagcatgatcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

167

Amino Acids

18.45

Weight (kDa)

5.05

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 176
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 366
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 28, 161
AcsI RAATTY 2 cut(s) 223, 479
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 109, 114, 176
AgsI TTSAA 2 cut(s) 25, 484
AjnI CCWGG 2 cut(s) 102, 107
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 155, 197
AlwI GGATC 2 cut(s) 28, 161
AoxI GGCC 1 cut(s) 105
ApoI RAATTY 2 cut(s) 223, 479
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 386, 416
BanI GGYRCC 1 cut(s) 332
BccI CCATC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 2 cut(s) 104, 109
BclI TGATCA 2 cut(s) 265, 495
BcoDI GTCTC 2 cut(s) 155, 197
BfmI CTRYAG 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 104, 109
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 104, 109
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 14, 108
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 114, 176
Bse1I ACTGG 2 cut(s) 128, 239
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 104, 109
BseDI CCNNGG 2 cut(s) 14, 108
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 3 cut(s) 109, 114, 176
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 128, 239
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 109, 114, 176
BsmAI GTCTC 2 cut(s) 155, 197
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 5 cut(s) 33, 166, 265, 457, 495
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 107
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 2 cut(s) 28, 161
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 128, 239
BssECI CCNNGG 2 cut(s) 14, 108
BssMI GATC 5 cut(s) 33, 166, 265, 457, 495
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 2 cut(s) 104, 109
Bst4CI ACNGT 3 cut(s) 131, 311, 355
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 366
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 5 cut(s) 36, 169, 268, 460, 498
BstMAI GTCTC 2 cut(s) 155, 197
BstMBI GATC 5 cut(s) 33, 166, 265, 457, 495
BstMWI GCNNNNNNNGC 3 cut(s) 83, 92, 374
BstNI CCWGG 2 cut(s) 104, 109
BstSCI CCNGG 2 cut(s) 102, 107
BstSFI CTRYAG 1 cut(s) 310
BstUI CGCG 1 cut(s) 366
BstX2I RGATCY 2 cut(s) 33, 166
BstYI RGATCY 2 cut(s) 33, 166
BsuRI GGCC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 351, 442
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 333
CviAII CATG 2 cut(s) 88, 493
CviJI RGCY 4 cut(s) 107, 249, 271, 346
CviKI_1 RGCY 4 cut(s) 107, 249, 271, 346
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 461
DpnI GATC 5 cut(s) 35, 168, 267, 459, 497
DpnII GATC 5 cut(s) 33, 166, 265, 457, 495
Eco130I CCWWGG 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 102, 107
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 91, 496
FaiI YATR 9 cut(s) 68, 75, 89, 177, 190, 192, 320, 468, 494
FatI CATG 2 cut(s) 87, 492
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 2 cut(s) 265, 495
FblI GTMKAC 1 cut(s) 306
FokI GGATG 1 cut(s) 227
GlaI GCGC 1 cut(s) 367
HaeIII GGCC 1 cut(s) 107
HhaI GCGC 1 cut(s) 368
Hin1II CATG 2 cut(s) 91, 496
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 3 cut(s) 10, 218, 382
HphI GGTGA 2 cut(s) 386, 416
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 25, 358
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 22, 188, 261
HpyCH4III ACNGT 3 cut(s) 131, 311, 355
HpyCH4V TGCA 3 cut(s) 4, 186, 477
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 92, 374
HpyF3I CTNAG 1 cut(s) 461
Hsp92II CATG 2 cut(s) 91, 496
HspAI GCGC 1 cut(s) 366
KpnI GGTACC 1 cut(s) 336
Ksp22I TGATCA 2 cut(s) 265, 495
Kzo9I GATC 5 cut(s) 33, 166, 265, 457, 495
LmnI GCTCC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 131, 440
MalI GATC 5 cut(s) 35, 168, 267, 459, 497
MboI GATC 5 cut(s) 33, 166, 265, 457, 495
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 33, 166
MluCI AATT 5 cut(s) 20, 181, 223, 372, 479
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 2 cut(s) 108, 379
MseI TTAA 1 cut(s) 429
MspR9I CCNGG 2 cut(s) 104, 109
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 2 cut(s) 104, 109
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 83, 92, 374
NdeI CATATG 1 cut(s) 190
NdeII GATC 5 cut(s) 33, 166, 265, 457, 495
NlaIII CATG 2 cut(s) 91, 496
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 131
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 10, 382
PflMI CCANNNNNTGG 1 cut(s) 176
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 102, 107
PspGI CCWGG 2 cut(s) 102, 107
PspN4I GGNNCC 1 cut(s) 334
PsuI RGATCY 2 cut(s) 33, 166
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 429
Sau3AI GATC 5 cut(s) 33, 166, 265, 457, 495
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 104, 109
SetI ASST 6 cut(s) 51, 273, 306, 326, 338, 406
SfcI CTRYAG 1 cut(s) 310
Sse9I AATT 5 cut(s) 20, 181, 223, 372, 479
SsiI CCGC 1 cut(s) 364
StyD4I CCNGG 2 cut(s) 102, 107
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 3 cut(s) 131, 311, 355
TaqI TCGA 1 cut(s) 342
TasI AATT 5 cut(s) 20, 181, 223, 372, 479
TfiI GAWTC 2 cut(s) 10, 382
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 358, 442
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 69, 104, 207
TspRI CASTG 2 cut(s) 358, 442
Van91I CCANNNNNTGG 1 cut(s) 176
XapI RAATTY 2 cut(s) 223, 479
XmiI GTMKAC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.