Rh5CG112300

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000486
Physical Location & Seq
Forward (+)
9210460 .. 9211261
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG112300.1

Sequence Viewer

Length: 312 bp
ATGAATGCTTACTACCAAGAGGAACATGATTGCAAATTCGGTGGCTCTGGACTCAAATCTATTACCGATCCAAGCTATGGGAACTGCATTTTTGTAGGTTCAGAAAAGATGATTTCTCCTCAAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTTACAGTTTACTCCAAAGGAACATTGACTTCGCTTGTAGTCAAGTCGATTGTAGCGTAATTCAAACCGGTGGCAAATGCCAATTAGCAGACACTGTCATGAACCTTGCATCAGTTGCCATGAATCTCTCTCTTCTATCAAGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

103

Amino Acids

11.18

Weight (kDa)

6.52

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 46 - 96 8.8e-10 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 2 cut(s) 75, 128
AluI AGCT 2 cut(s) 75, 128
AlwI GGATC 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 230
BbvI GCAGC 1 cut(s) 137
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmsI GCATC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 230
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 77
BsmI GAATGC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 261
BspPI GGATC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 170, 259
Bst6I CTCTTC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 131
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 257
CciI TCATGA 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 3 cut(s) 26, 262, 283
CviJI RGCY 4 cut(s) 45, 75, 128, 154
CviKI_1 RGCY 4 cut(s) 45, 75, 128, 154
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
FaeI CATG 3 cut(s) 29, 265, 286
FaiI YATR 4 cut(s) 27, 78, 263, 284
FatI CATG 3 cut(s) 25, 261, 282
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HapII CCGG 1 cut(s) 231
Hin1II CATG 3 cut(s) 29, 265, 286
HinfI GANTC 3 cut(s) 51, 286, 306
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 103, 132
Hpy188III TCNNGA 3 cut(s) 48, 262, 303
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 170, 259
HpyCH4V TGCA 4 cut(s) 33, 87, 149, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 3 cut(s) 29, 265, 286
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 33, 244
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 281
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 287
MluCI AATT 3 cut(s) 35, 222, 245
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 2 cut(s) 13, 129
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 1 cut(s) 67
NlaIII CATG 3 cut(s) 29, 265, 286
PagI TCATGA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 286, 306
PflFI GACNNNGTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 257
PsyI GACNNNGTC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 260
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 45
SetI ASST 4 cut(s) 77, 100, 130, 270
SfaNI GCATC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 3 cut(s) 35, 222, 245
TaaI ACNGT 2 cut(s) 170, 259
TaqI TCGA 1 cut(s) 210
TasI AATT 3 cut(s) 35, 222, 245
TfiI GAWTC 2 cut(s) 286, 306
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 17, 278, 299
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 257
Van91I CCANNNNNTGG 1 cut(s) 77
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.