Rh5BG100300

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000486
Physical Location & Seq
Forward (+)
9173535 .. 9199565
26031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG100300.1

Sequence Viewer

Length: 1158 bp
ATGGCTCAATCAAGTAGTGCTTCATCTCTTTCCATTCTGTTCCTTCTGCTCTTGTTCATCCACTTTCCTGGAGGGCCTATAAAGGTTGTTAGTGAGGATGAGAATAAGACCTGGTGTGTTGCTAAGCCTTCAGCAACTGATTCAGAGCTCTCTGCTAACATTCAGTTTGCCTGCAACCAATTGAAGGATTGCAAGGCCAAAACAGCTGGAATTGTGACTTCAGAGGATCTGCTCTCATCACTCAGACTGATCCAAGTTATGGTAGCTGCAAGTATGCATAGCAGGTGTACAAGCGGAGATCCATGCTTTGTCCCCTCGAACTTGTTTAGTCGTGCATCCTTTGCCATGAATGCTTACTACCAACAGGAACATGATTGCAGCTCTAGACTCAAATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGAAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTTACAGTTTACTGCAAATGAACATTGACTTCGCTTGTAGTCAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCAGAACAGATTTGAGCTGTCATTTCAAGTCGACCGGCATGATTGTGATTGACGATCCAAGTTTTGGAACTTGTTTGTACAAAAGAAAAGGGAAGGATGGAGGTGCTGGTGTGAGTCTCGTAAAAAAGCATGGGAAATCTAGTGTCATTTTAAAATTGATAGTTGCGTTGATAATTACTTTTGGGTTGGTAGGGACTGTAACTGTTGTGTGCGTGTGCCGGCGTTCTCGGAATCCCTCACAAGCAATAAAAAGTGAGATGCAACACATGCCAACCCCAGCCCCCTCTCAGTCCCAGCCACAGCCATCATGTTCAGTGACAGTATCAGTTCCCTGTGAGGCGGTATCAGTTCCTCTCAGTCCCCCTCCCGGTCCTTCTCAAACACAACCCAAGAAAGACGACGCCCAACTTGACATTGTTATTTCAGGTAATCAAGTCAATGGAAACAAAGGAGACCATAATGGACAGTTCTCCGTTGGCAACACTATACACAAGACTGTCCATATCAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

385

Amino Acids

41.28

Weight (kDa)

8.08

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 158 - 228 4.2e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AccB7I CCANNNNNTGG 2 cut(s) 259, 707
AccI GTMKAC 2 cut(s) 546, 674
AccII CGCG 1 cut(s) 608
AciI CCGC 2 cut(s) 294, 983
AclWI GGATC 5 cut(s) 234, 244, 293, 398, 692
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 2 cut(s) 114, 204
AcyI GRCGYC 1 cut(s) 1044
AfaI GTAC 2 cut(s) 289, 722
AfiI CCNNNNNNNGG 5 cut(s) 184, 259, 413, 707, 1010
AflIII ACRYGT 1 cut(s) 606
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 3 cut(s) 184, 563, 670
AjnI CCWGG 2 cut(s) 67, 110
AluBI AGCT 7 cut(s) 148, 206, 266, 381, 411, 464, 660
AluI AGCT 7 cut(s) 148, 206, 266, 381, 411, 464, 660
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 764, 1089
AlwI GGATC 5 cut(s) 234, 244, 293, 398, 692
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 2 cut(s) 74, 195
ApeKI GCWGC 2 cut(s) 266, 378
ApoI RAATTY 1 cut(s) 425
AsiGI ACCGGT 1 cut(s) 566
AspS9I GGNCC 2 cut(s) 74, 1013
AsuC2I CCSGG 1 cut(s) 1011
AsuHPI GGTGA 1 cut(s) 584
AvaII GGWCC 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 253, 390
BccI CCATC 2 cut(s) 734, 955
BciT130I CCWGG 2 cut(s) 69, 112
BcnI CCSGG 1 cut(s) 1011
BcoDI GTCTC 2 cut(s) 764, 1089
BfaI CTAG 2 cut(s) 384, 783
BfmI CTRYAG 1 cut(s) 550
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 2 cut(s) 267, 379
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 2 cut(s) 268, 380
Bme1390I CCNGG 3 cut(s) 69, 112, 1011
Bme18I GGWCC 1 cut(s) 1013
BmgT120I GGNCC 2 cut(s) 74, 1013
BmrFI CCNGG 3 cut(s) 69, 112, 1011
BmsI GCATC 2 cut(s) 344, 891
BpmI CTGGAG 2 cut(s) 90, 441
Bpu1102I GCTNAGC 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 1011
BsaHI GRCGYC 1 cut(s) 1044
BsaI GGTCTC 1 cut(s) 1089
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 259, 413, 707, 1010
Bse118I RCCGGY 3 cut(s) 566, 677, 861
BseBI CCWGG 2 cut(s) 69, 112
BseGI GGATG 4 cut(s) 57, 103, 335, 745
BseLI CCNNNNNNNGG 5 cut(s) 184, 259, 413, 707, 1010
BseMII CTCAG 4 cut(s) 256, 458, 944, 1012
BseXI GCAGC 2 cut(s) 253, 390
BseYI CCCAGC 2 cut(s) 919, 936
Bsh1236I CGCG 1 cut(s) 608
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 2 cut(s) 76, 197
BshTI ACCGGT 1 cut(s) 566
BsiEI CGRYCG 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 4 cut(s) 567, 678, 862, 1011
BslFI GGGAC 4 cut(s) 296, 850, 919, 987
BslI CCNNNNNNNGG 5 cut(s) 184, 259, 413, 707, 1010
BsmAI GTCTC 2 cut(s) 764, 1089
BsmFI GGGAC 4 cut(s) 296, 850, 919, 987
BsmI GAATGC 2 cut(s) 355, 581
BsnI GGCC 2 cut(s) 76, 197
Bso31I GGTCTC 1 cut(s) 1089
Bsp1286I GDGCHC 1 cut(s) 150
Bsp1407I TGTACA 2 cut(s) 287, 720
Bsp143I GATC 5 cut(s) 226, 249, 298, 403, 697
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 2 cut(s) 294, 983
BspANI GGCC 2 cut(s) 76, 197
BspCNI CTCAG 4 cut(s) 255, 459, 943, 1011
BspFNI CGCG 1 cut(s) 608
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 5 cut(s) 234, 244, 293, 398, 692
BspTNI GGTCTC 1 cut(s) 1089
BsrFI RCCGGY 3 cut(s) 566, 677, 861
BsrGI TGTACA 2 cut(s) 287, 720
BssAI RCCGGY 3 cut(s) 566, 677, 861
BssMI GATC 5 cut(s) 226, 249, 298, 403, 697
BssNI GRCGYC 1 cut(s) 1044
Bst2UI CCWGG 2 cut(s) 69, 112
Bst4CI ACNGT 7 cut(s) 506, 551, 841, 847, 964, 1110, 1141
BstACI GRCGYC 1 cut(s) 1044
BstAPI GCANNNNNTGC 2 cut(s) 341, 910
BstAUI TGTACA 2 cut(s) 287, 720
BstC8I GCNNGC 2 cut(s) 172, 863
BstDEI CTNAG 5 cut(s) 123, 242, 467, 930, 998
BstF5I GGATG 4 cut(s) 57, 103, 335, 745
BstFNI CGCG 1 cut(s) 608
BstKTI GATC 5 cut(s) 229, 252, 301, 406, 700
BstMAI GTCTC 2 cut(s) 764, 1089
BstMBI GATC 5 cut(s) 226, 249, 298, 403, 697
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 6 cut(s) 203, 341, 350, 461, 614, 910
BstNI CCWGG 2 cut(s) 69, 112
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 3 cut(s) 67, 110, 1009
BstSFI CTRYAG 1 cut(s) 550
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 2 cut(s) 253, 390
BstX2I RGATCY 2 cut(s) 226, 298
BstXI CCANNNNNNTGG 2 cut(s) 68, 641
BstYI RGATCY 2 cut(s) 226, 298
BsuRI GGCC 2 cut(s) 76, 197
BtsCI GGATG 4 cut(s) 57, 103, 335, 745
BtsIMutI CAGTG 1 cut(s) 963
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 172, 863
CaiI CAGNNNCTG 1 cut(s) 137
Cfr10I RCCGGY 3 cut(s) 566, 677, 861
Cfr13I GGNCC 2 cut(s) 74, 1013
CseI GACGC 2 cut(s) 597, 1052
CsiI ACCWGGT 1 cut(s) 110
Csp6I GTAC 2 cut(s) 288, 721
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 8 cut(s) 303, 346, 371, 619, 682, 773, 910, 951
CviQI GTAC 2 cut(s) 288, 721
DdeI CTNAG 5 cut(s) 123, 242, 467, 930, 998
DpnI GATC 5 cut(s) 228, 251, 300, 405, 699
DpnII GATC 5 cut(s) 226, 249, 298, 403, 697
DraI TTTAAA 1 cut(s) 795
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 1089
Eco47I GGWCC 1 cut(s) 1013
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 114, 204
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 67, 110
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 8 cut(s) 306, 349, 374, 622, 685, 776, 913, 954
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 4 cut(s) 296, 850, 919, 987
FatI CATG 8 cut(s) 302, 345, 370, 618, 681, 772, 909, 950
FblI GTMKAC 2 cut(s) 546, 674
Fnu4HI GCNGC 2 cut(s) 267, 379
FokI GGATG 4 cut(s) 44, 110, 322, 752
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 267, 379
FspBI CTAG 2 cut(s) 384, 783
GluI GCNGC 2 cut(s) 267, 379
GsaI CCCAGC 2 cut(s) 923, 940
GsuI CTGGAG 2 cut(s) 90, 441
HaeIII GGCC 2 cut(s) 76, 197
HapII CCGG 4 cut(s) 567, 678, 862, 1011
HgaI GACGC 2 cut(s) 597, 1052
Hin1I GRCGYC 1 cut(s) 1044
Hin1II CATG 8 cut(s) 306, 349, 374, 622, 685, 776, 913, 954
HincII GTYRAC 2 cut(s) 547, 675
HindII GTYRAC 2 cut(s) 547, 675
HinfI GANTC 5 cut(s) 140, 387, 622, 757, 874
HpaII CCGG 4 cut(s) 567, 678, 862, 1011
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 4 cut(s) 288, 509, 547, 675
Hpy188I TCNGA 6 cut(s) 145, 223, 245, 439, 468, 873
Hpy188III TCNNGA 2 cut(s) 384, 458
Hpy8I GTNNAC 4 cut(s) 288, 509, 547, 675
Hpy99I CGWCG 1 cut(s) 1046
HpyAV CCTTC 5 cut(s) 53, 138, 178, 730, 1026
HpyCH4III ACNGT 7 cut(s) 506, 551, 841, 847, 964, 1110, 1141
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 341, 350, 461, 614, 910
HpyF3I CTNAG 5 cut(s) 123, 242, 467, 930, 998
Hsp92I GRCGYC 1 cut(s) 1044
Hsp92II CATG 8 cut(s) 306, 349, 374, 622, 685, 776, 913, 954
KroI GCCGGC 1 cut(s) 861
KroNI GCCGGC 1 cut(s) 863
Kzo9I GATC 5 cut(s) 226, 249, 298, 403, 697
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 2 cut(s) 253, 390
LweI GCATC 2 cut(s) 344, 891
MabI ACCWGGT 1 cut(s) 110
MaeI CTAG 2 cut(s) 384, 783
MaeIII GTNAC 3 cut(s) 214, 841, 958
MalI GATC 5 cut(s) 228, 251, 300, 405, 699
MboI GATC 5 cut(s) 226, 249, 298, 403, 697
MboII GAAGA 1 cut(s) 452
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 2 cut(s) 226, 298
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 7 cut(s) 179, 210, 425, 558, 581, 797, 816
MluI ACGCGT 1 cut(s) 606
MlyI GAGTC 2 cut(s) 381, 766
Mph1103I ATGCAT 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 861
MseI TTAA 1 cut(s) 794
MslI CAYNNNNRTG 2 cut(s) 596, 686
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 4 cut(s) 567, 678, 862, 1011
MspR9I CCNGG 3 cut(s) 69, 112, 1011
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 2 cut(s) 355, 581
MvaI CCWGG 2 cut(s) 69, 112
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 6 cut(s) 203, 341, 350, 461, 614, 910
NaeI GCCGGC 1 cut(s) 863
NciI CCSGG 1 cut(s) 1011
NdeII GATC 5 cut(s) 226, 249, 298, 403, 697
NgoMIV GCCGGC 1 cut(s) 861
NlaIII CATG 8 cut(s) 306, 349, 374, 622, 685, 776, 913, 954
NmuCI GTSAC 2 cut(s) 214, 958
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 913
PaqCI CACCTGC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PctI GAATGC 2 cut(s) 355, 581
PdiI GCCGGC 1 cut(s) 863
PfeI GAWTC 3 cut(s) 140, 622, 874
PflMI CCANNNNNTGG 2 cut(s) 259, 707
PfoI TCCNGGA 1 cut(s) 67
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 2 cut(s) 268, 380
PleI GAGTC 2 cut(s) 381, 765
PpsI GAGTC 2 cut(s) 381, 765
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 67, 110
PspFI CCCAGC 2 cut(s) 919, 936
PspGI CCWGG 2 cut(s) 67, 110
PspPI GGNCC 2 cut(s) 74, 1013
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 2 cut(s) 226, 298
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 289, 722
RsaNI GTAC 2 cut(s) 288, 721
RseI CAYNNNNRTG 2 cut(s) 596, 686
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 2 cut(s) 545, 673
SaqAI TTAA 1 cut(s) 794
SatI GCNGC 2 cut(s) 267, 379
Sau3AI GATC 5 cut(s) 226, 249, 298, 403, 697
Sau96I GGNCC 2 cut(s) 74, 1013
SchI GAGTC 2 cut(s) 381, 766
ScrFI CCNGG 3 cut(s) 69, 112, 1011
SduI GDGCHC 1 cut(s) 150
SexAI ACCWGGT 1 cut(s) 110
SfaNI GCATC 2 cut(s) 344, 891
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 1 cut(s) 1013
SmiMI CAYNNNNRTG 2 cut(s) 596, 686
Sse9I AATT 7 cut(s) 179, 210, 425, 558, 581, 797, 816
SsiI CCGC 2 cut(s) 294, 983
SspMI CTAG 2 cut(s) 384, 783
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 67, 110, 1009
TaaI ACNGT 7 cut(s) 506, 551, 841, 847, 964, 1110, 1141
TaqI TCGA 3 cut(s) 317, 546, 674
TasI AATT 7 cut(s) 179, 210, 425, 558, 581, 797, 816
TatI WGTACW 2 cut(s) 287, 720
TfiI GAWTC 3 cut(s) 140, 622, 874
Tru1I TTAA 1 cut(s) 794
Tru9I TTAA 1 cut(s) 794
TscAI CASTG 1 cut(s) 963
TseFI GTSAC 2 cut(s) 214, 958
TseI GCWGC 2 cut(s) 266, 378
Tsp45I GTSAC 2 cut(s) 214, 958
TspDTI ATGAA 6 cut(s) 12, 46, 362, 533, 614, 635
TspGWI ACGGA 2 cut(s) 429, 1105
TspRI CASTG 1 cut(s) 963
Van91I CCANNNNNTGG 2 cut(s) 259, 707
VpaK11BI GGWCC 1 cut(s) 1013
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 1 cut(s) 913
XmiI GTMKAC 2 cut(s) 546, 674
XspI CTAG 2 cut(s) 384, 783
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.