Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000486

Physical Location & Seq

Genomic Coordinates Reverse (-)

8841613 .. 8842032

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCAACAACAACTAAGCTCGTTCTAGCCCTTCTTCTCTTACAGCTCGCAACAACCGCCTACTCAAAGGGAAAGGGAGCTAAACCAGGTAACCAACCAAAACCAGGTCAACCAGGCAAACCAGCAAAACCAAATCTTACCCCGACTCTTGGAGGCAAGAAGTACTGTGTAGCAAAACCAGGTGCTAGCCCTAAAGCTTTGCAGGCAAATATCGACTACGTATGTGGGAAGGGAGTGGATTGCAAGCCCATTCAAGCTGGCGGAGTTTGCTCCTCTAATGATCTTGCTAGTAAGGCATCTTACGTGATGAATGCTTACTATCAGGCCAACGGCCGTGACACTTTCAACTGTGATTTTTCTGGAAGCGGGCAACTTACCACCGTGAACCCAAGCAAGGGAATATGTATATACACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

140

Amino Acids

14.32

Weight (kDa)

9.51

Isoelectric Point (pI)

16.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	55 - 123	2.7e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca	FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica	MD10G1265100.v1.1
prunus_persica	Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis	pycom05g26640 pycom10g22110
rosa_chinensis	RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata	RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora	Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa	Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha	Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana	Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	57, 261, 366
AcoI	YGGCCR	1 cut(s)	331
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	4 cut(s)	104, 149, 394, 395
AgsI	TTSAA	2 cut(s)	254, 346
AjnI	CCWGG	4 cut(s)	85, 103, 112, 178
AluBI	AGCT	5 cut(s)	19, 46, 80, 197, 257
AluI	AGCT	5 cut(s)	19, 46, 80, 197, 257
AoxI	GGCC	2 cut(s)	324, 331
AsuNHI	GCTAGC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	318, 346
BciT130I	CCWGG	4 cut(s)	87, 105, 114, 180
BfaI	CTAG	3 cut(s)	26, 186, 288
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	4 cut(s)	87, 105, 114, 180
BmrFI	CCNGG	4 cut(s)	87, 105, 114, 180
BmsI	GCATC	1 cut(s)	305
BmtI	GCTAGC	1 cut(s)	189
BsaAI	YACGTR	2 cut(s)	220, 304
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 149, 394, 395
BseBI	CCWGG	4 cut(s)	87, 105, 114, 180
BseLI	CCNNNNNNNGG	4 cut(s)	104, 149, 394, 395
BseRI	GAGGAG	1 cut(s)	262
BseX3I	CGGCCG	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	326, 333
BsiEI	CGRYCG	1 cut(s)	334
BslI	CCNNNNNNNGG	4 cut(s)	104, 149, 394, 395
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	326, 333
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	57, 261, 366
BspANI	GGCC	2 cut(s)	326, 333
BspOI	GCTAGC	1 cut(s)	189
BssMI	GATC	1 cut(s)	280
Bst2UI	CCWGG	4 cut(s)	87, 105, 114, 180
Bst4CI	ACNGT	3 cut(s)	167, 350, 382
BstBAI	YACGTR	2 cut(s)	220, 304
BstC8I	GCNNGC	6 cut(s)	48, 187, 204, 245, 259, 368
BstDEI	CTNAG	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 203, 267, 293
BstNI	CCWGG	4 cut(s)	87, 105, 114, 180
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	4 cut(s)	85, 103, 112, 178
BstSNI	TACGTA	1 cut(s)	220
BstZI	CGGCCG	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	326, 333
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	6 cut(s)	48, 187, 204, 245, 259, 368
CsiI	ACCWGGT	3 cut(s)	85, 103, 178
Csp6I	GTAC	1 cut(s)	163
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	331
EagI	CGGCCG	1 cut(s)	331
EciI	GGCGGA	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	331
Eco105I	TACGTA	1 cut(s)	220
Eco52I	CGGCCG	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	4 cut(s)	85, 103, 112, 178
FaiI	YATR	4 cut(s)	223, 403, 407, 409
FauI	CCCGC	1 cut(s)	359
FspBI	CTAG	3 cut(s)	26, 186, 288
HaeIII	GGCC	2 cut(s)	326, 333
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	110, 385
Hpy188III	TCNNGA	1 cut(s)	360
Hpy8I	GTNNAC	2 cut(s)	110, 385
HpyAV	CCTTC	2 cut(s)	41, 223
HpyCH4III	ACNGT	3 cut(s)	167, 350, 382
HpyCH4IV	ACGT	2 cut(s)	219, 303
HpyCH4V	TGCA	2 cut(s)	202, 243
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 203, 267, 293
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	2 cut(s)	219, 303
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	2 cut(s)	77, 275
LweI	GCATC	1 cut(s)	305
MabI	ACCWGGT	3 cut(s)	85, 103, 178
MaeI	CTAG	3 cut(s)	26, 186, 288
MaeII	ACGT	2 cut(s)	219, 303
MaeIII	GTNAC	2 cut(s)	89, 335
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	146, 283
MspR9I	CCNGG	4 cut(s)	87, 105, 114, 180
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	4 cut(s)	87, 105, 114, 180
MwoI	GCNNNNNNNGC	4 cut(s)	56, 203, 267, 293
NdeII	GATC	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	335
PctI	GAATGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	2 cut(s)	220, 304
Psp6I	CCWGG	4 cut(s)	85, 103, 112, 178
PspEI	GGTNACC	1 cut(s)	89
PspGI	CCWGG	4 cut(s)	85, 103, 112, 178
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	280
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	4 cut(s)	87, 105, 114, 180
SexAI	ACCWGGT	3 cut(s)	85, 103, 178
SfaNI	GCATC	1 cut(s)	305
SnaBI	TACGTA	1 cut(s)	220
SsiI	CCGC	3 cut(s)	57, 261, 366
SspMI	CTAG	3 cut(s)	26, 186, 288
StyD4I	CCNGG	4 cut(s)	85, 103, 112, 178
TaaI	ACNGT	3 cut(s)	167, 350, 382
TaiI	ACGT	2 cut(s)	222, 306
TaqI	TCGA	1 cut(s)	213
TatI	WGTACW	1 cut(s)	162
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	418
XspI	CTAG	3 cut(s)	26, 186, 288
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.