Rh5AG104000

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000486
Physical Location & Seq
Forward (+)
9574900 .. 9576487
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG104000.1

Sequence Viewer

Length: 651 bp
ATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATTACTGATCCAAGCTATGGGAACTGCTACTTTGCAGGTAGAAAAGAGACGGTTTCCTCTTCAGCAGCTCTGAGTACATGGTGTGTTGCAAAGCCAACTGCCACTGACAATCTTCTACAATTGAACATTGACTTCGCTTGTAGTCATGTCAACTGTAGTGTTATTGAACCCCGTGGTGAATGCCAATTACCAGACGCTATAATGAACCACGCATCTGTTGCCATGAATCTTTACTATCAATCTTTTGGCAGAACAGATATGAGCTGTTATTTTCAGTCCACAGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTCTATGAAGGGGTTTTCCCTGACAGCGAACCTGTGACTCCTGTCCCTGCAAAGGGGAAAAGTAGGGCCTTTTCTGCAACATCAGTTGGAGTTATGGTGATGGGGTCGATCATTGGTTGTGCGCTGGTGGCAGTGGCTATATATGTTATGCTCTGGCTTCGTCAGCCCCGCCCGCCAGTGGTAAAGGAAGTTCACATGGACCCATTGCCACAGCCATTGTATCAACCACCAGAGCCATCAGCTTCCCCAGCTCCTGTTGAGGGTTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

216

Amino Acids

23.35

Weight (kDa)

4.95

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 45 - 115 1.3e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 83
AccB7I CCANNNNNTGG 2 cut(s) 74, 368
AciI CCGC 2 cut(s) 547, 551
AclWI GGATC 2 cut(s) 59, 353
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 6 cut(s) 74, 368, 430, 431, 556, 638
AgsI TTSAA 3 cut(s) 181, 224, 356
AluBI AGCT 5 cut(s) 72, 125, 321, 620, 629
AluI AGCT 5 cut(s) 72, 125, 321, 620, 629
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 59, 353
AlwNI CAGNNNCTG 1 cut(s) 632
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 2 cut(s) 444, 577
AsuHPI GGTGA 2 cut(s) 245, 487
AvaII GGWCC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 472, 622
BcoDI GTCTC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 2 cut(s) 444, 577
BmiI GGNNCC 1 cut(s) 579
BmsI GCATC 1 cut(s) 278
BoxI GACNNNNGTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 6 cut(s) 74, 368, 430, 431, 556, 638
Bse1I ACTGG 2 cut(s) 28, 554
Bse3DI GCAATG 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 6 cut(s) 74, 368, 430, 431, 556, 638
BseMI GCAATG 1 cut(s) 581
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 28, 554
BseXI GCAGC 1 cut(s) 134
BseYI CCCAGC 1 cut(s) 625
BshFI GGCC 1 cut(s) 446
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 6 cut(s) 74, 368, 430, 431, 556, 638
BsmAI GTCTC 1 cut(s) 98
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 2 cut(s) 10, 242
BsnI GGCC 1 cut(s) 446
Bsp143I GATC 3 cut(s) 64, 358, 486
BspACI CCGC 2 cut(s) 547, 551
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 59, 353
BsrDI GCAATG 1 cut(s) 581
BsrI ACTGG 2 cut(s) 28, 554
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 64, 358, 486
Bst4CI ACNGT 2 cut(s) 109, 212
Bst6I CTCTTC 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 3 cut(s) 67, 361, 489
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 64, 358, 486
BstMWI GCNNNNNNNGC 6 cut(s) 275, 452, 506, 541, 550, 626
BstPAI GACNNNNGTC 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 2 cut(s) 35, 343
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 4 cut(s) 35, 159, 516, 561
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 551
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 444, 577
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 135, 203, 280, 343, 574
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 66, 360, 488
DpnII GATC 3 cut(s) 64, 358, 486
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 5 cut(s) 138, 206, 283, 346, 577
FaqI GGGAC 1 cut(s) 407
FatI CATG 5 cut(s) 134, 202, 279, 342, 573
FauI CCCGC 2 cut(s) 554, 558
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GlaI GCGC 1 cut(s) 501
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 629
HaeIII GGCC 1 cut(s) 446
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 502
Hin1II CATG 5 cut(s) 138, 206, 283, 346, 577
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 3 cut(s) 48, 283, 415
HphI GGTGA 2 cut(s) 245, 487
Hpy166II GTNNAC 3 cut(s) 208, 336, 571
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 17, 45, 369
Hpy8I GTNNAC 3 cut(s) 208, 336, 571
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 2 cut(s) 109, 212
HpyCH4V TGCA 4 cut(s) 92, 146, 428, 455
HpyF10VI GCNNNNNNNGC 6 cut(s) 275, 452, 506, 541, 550, 626
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 5 cut(s) 138, 206, 283, 346, 577
HspAI GCGC 1 cut(s) 500
Kzo9I GATC 3 cut(s) 64, 358, 486
LmnI GCTCC 2 cut(s) 19, 634
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 38, 412
MalI GATC 3 cut(s) 66, 360, 488
MboI GATC 3 cut(s) 64, 358, 486
MboII GAAGA 3 cut(s) 108, 161, 368
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 358
MluCI AATT 2 cut(s) 176, 242
MlyI GAGTC 2 cut(s) 42, 409
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 2 cut(s) 124, 631
MslI CAYNNNNRTG 2 cut(s) 341, 347
MunI CAATTG 1 cut(s) 176
Mva1269I GAATGC 2 cut(s) 10, 242
MwoI GCNNNNNNNGC 6 cut(s) 275, 452, 506, 541, 550, 626
NdeII GATC 3 cut(s) 64, 358, 486
NlaIII CATG 5 cut(s) 138, 206, 283, 346, 577
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 412
PctI GAATGC 2 cut(s) 10, 242
PfeI GAWTC 1 cut(s) 283
PflMI CCANNNNNTGG 2 cut(s) 74, 368
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 2 cut(s) 42, 409
PpsI GAGTC 2 cut(s) 42, 409
PshAI GACNNNNGTC 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 625
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 2 cut(s) 444, 577
PsrI GAACNNNNNNTAC 2 cut(s) 552, 584
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 2 cut(s) 341, 347
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 3 cut(s) 64, 358, 486
Sau96I GGNCC 2 cut(s) 444, 577
SchI GAGTC 2 cut(s) 42, 409
SetI ASST 7 cut(s) 74, 97, 127, 323, 412, 622, 631
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 341, 347
Sse9I AATT 2 cut(s) 176, 242
SsiI CCGC 2 cut(s) 547, 551
TaaI ACNGT 2 cut(s) 109, 212
TaqI TCGA 1 cut(s) 485
TasI AATT 2 cut(s) 176, 242
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 1 cut(s) 283
TscAI CASTG 4 cut(s) 35, 166, 516, 561
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 4 cut(s) 17, 275, 296, 399
TspRI CASTG 4 cut(s) 35, 166, 516, 561
Van91I CCANNNNNTGG 2 cut(s) 74, 368
VpaK11BI GGWCC 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.