RchiOBHm_Chr5g0013281

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000486
Physical Location & Seq
Forward (+)
8993442 .. 8994697
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29382

Sequence Viewer

Length: 345 bp
ATGCAATGGATTGCAAGGCAATTCAAAAAGGAGATCCCTGCTCCAAACCTAATGATCCTTTGCTTTATGCTTTATGCTTCATTTGCCATGAATGCTTACTACCAGGCCAGGGGGATGCACTACTGGAACTGTGACTTTGGCAACTCTGGTCTCATTTCCTTGACAGATCCAAGTTATGGTAATTGCACATATGAAGGGGGAGAGACAGCGATGGATGACTCAAATTCGGGAAACTGGTGTGTAGCAAGCCCTTCAGCAAGTGATGATCAGCTACAAGCGAACATTGAGTTTGCTTGTGGCAAGGTAGACTGTAGCATTATAAGGTCTGGTGGTGCCTGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

4.46

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 79 - 112 3.4e-08 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 176
AccI GTMKAC 1 cut(s) 306
AclWI GGATC 3 cut(s) 28, 49, 161
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 109, 176
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 102, 107
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 155, 197
AlwI GGATC 3 cut(s) 28, 49, 161
AoxI GGCC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 223
BanI GGYRCC 1 cut(s) 332
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 2 cut(s) 104, 109
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 155, 197
BfaI CTAG 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 104, 109
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 104, 109
BmsI GCATC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 176
Bse1I ACTGG 2 cut(s) 128, 239
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 104, 109
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 120, 220
BseLI CCNNNNNNNGG 2 cut(s) 109, 176
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 128, 239
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 109, 176
BsmAI GTCTC 2 cut(s) 155, 197
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 4 cut(s) 33, 54, 166, 265
BspANI GGCC 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 3 cut(s) 28, 49, 161
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 128, 239
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 4 cut(s) 33, 54, 166, 265
Bst2UI CCWGG 2 cut(s) 104, 109
Bst4CI ACNGT 2 cut(s) 131, 311
BstC8I GCNNGC 1 cut(s) 247
BstF5I GGATG 2 cut(s) 120, 220
BstKTI GATC 4 cut(s) 36, 57, 169, 268
BstMAI GTCTC 2 cut(s) 155, 197
BstMBI GATC 4 cut(s) 33, 54, 166, 265
BstMWI GCNNNNNNNGC 2 cut(s) 83, 92
BstNI CCWGG 2 cut(s) 104, 109
BstSCI CCNGG 2 cut(s) 102, 107
BstSFI CTRYAG 1 cut(s) 310
BstX2I RGATCY 2 cut(s) 33, 166
BstYI RGATCY 2 cut(s) 33, 166
BsuRI GGCC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 120, 220
Cac8I GCNNGC 1 cut(s) 247
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 107, 249, 271
CviKI_1 RGCY 3 cut(s) 107, 249, 271
DpnI GATC 4 cut(s) 35, 56, 168, 267
DpnII GATC 4 cut(s) 33, 54, 166, 265
Eco31I GGTCTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 102, 107
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 68, 75, 89, 177, 190, 192, 320
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 306
FokI GGATG 2 cut(s) 127, 227
FspBI CTAG 1 cut(s) 343
HaeIII GGCC 1 cut(s) 107
Hin1II CATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 188, 261
HpyCH4III ACNGT 2 cut(s) 131, 311
HpyCH4V TGCA 4 cut(s) 4, 14, 118, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 92
Hsp92II CATG 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 4 cut(s) 33, 54, 166, 265
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 9 cut(s) 51, 89, 94, 109, 116, 121, 132, 220, 312
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 131
MalI GATC 4 cut(s) 35, 56, 168, 267
MboI GATC 4 cut(s) 33, 54, 166, 265
MflI RGATCY 2 cut(s) 33, 166
MluCI AATT 3 cut(s) 20, 181, 223
MlyI GAGTC 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 104, 109
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 2 cut(s) 104, 109
MwoI GCNNNNNNNGC 2 cut(s) 83, 92
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 33, 54, 166, 265
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 131
PctI GAATGC 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 176
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 102, 107
PspGI CCWGG 2 cut(s) 102, 107
PspN4I GGNNCC 1 cut(s) 334
PsuI RGATCY 2 cut(s) 33, 166
Sau3AI GATC 4 cut(s) 33, 54, 166, 265
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 104, 109
SetI ASST 4 cut(s) 51, 273, 306, 326
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 310
Sse9I AATT 3 cut(s) 20, 181, 223
SspMI CTAG 1 cut(s) 343
StyD4I CCNGG 2 cut(s) 102, 107
TaaI ACNGT 2 cut(s) 131, 311
TasI AATT 3 cut(s) 20, 181, 223
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 69, 104, 207
Van91I CCANNNNNTGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.