Rh5AG104400

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000486
Physical Location & Seq
Forward (+)
9590251 .. 9608209
17959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG104400.1

Sequence Viewer

Length: 1188 bp
ATGAATGCTTACTACCAACAGGGACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGAAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTACCCCTTACAGTTTACTACAAATGAACATTGACTTCGCTTGTAGTCAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCAGAACAGATTTGAGCTATCATTTCAAGTCGACCGGCATAATTGTGATTGACGATCCAAGTTTTGGAACTTGTTTGTACAAAAGAAAAGGGAAGGAAGGAGGTGCTGGTGTGAGTCTCGTAAAAAAGCATGGGAAATCTAGTGTCATTTTAAAATTGATAGTTGCGTTGATAATTACTTTTGGGTTGGTAGGGACTGTAACTGTTGTGTGCGTGTGCCAGCGTTCTCGGAATCCATCACAAGCAATAAAAAGTGAGATGCAACACATGCCAACCCCAGCCCCTTCTCAATCCCAGCCACAGCCATCATGTTCAGTGACGGTATCAGTTCCCTGTCAGGCGGTATCAGTTCCTCTCAGTCCCCCTCCCGGTCCTTCTCAAACACAACCCAAGAAAGACAACGGCCAACTTGACATTGTTATTTCAGATTCGAGTTGTTATTTCAACTCGACTGGCATGAATGTGATTAAAGATCCAAGACATGGCCATGCCGCTTTCATGGCAGGCATTGCTAAGAATACCTGGTGTGTGGCAAAACCAACTGCCGCTGATAGTTTGCTACAATTGAACATTGACTTTGCTTGTAGTAAATTCAACTGTAGTGTAATTGAACCCGGTGGTGAATGCCAATTACCAGACACTCTAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCTTTTGGCAGAACAGATTTGAGCTGTTATTTTCAGTCGACCGGCATGGTTGTGATTGAAGATCCAAGTAAGTTCTGGAACCCTTGTGTCTATGAAGGGGTTGTCCTTGTGAGGGATGCTGTCCCTGCAAGTATCAAAATAAAGAAGGGGGAAAGTAAGGCCTTTTCTGCAATATCAATTGGACTTATGGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

395

Amino Acids

42.5

Weight (kDa)

7.79

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 46 - 114 5.4e-15 X8 domain
X8 PF07983 276 - 346 3.2e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 371, 788
AccI GTMKAC 3 cut(s) 210, 338, 1028
AccII CGCG 2 cut(s) 272, 962
AciI CCGC 3 cut(s) 647, 798, 852
AclWI GGATC 4 cut(s) 62, 356, 773, 1046
AcoI YGGCCR 2 cut(s) 709, 790
AcsI RAATTY 2 cut(s) 89, 896
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 4 cut(s) 371, 674, 788, 1102
AflIII ACRYGT 2 cut(s) 270, 960
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 7 cut(s) 227, 334, 751, 874, 901, 917, 1049
AjnI CCWGG 1 cut(s) 827
AluBI AGCT 4 cut(s) 75, 128, 324, 1014
AluI AGCT 4 cut(s) 75, 128, 324, 1014
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 4 cut(s) 62, 356, 773, 1046
AoxI GGCC 3 cut(s) 709, 790, 1149
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 2 cut(s) 89, 896
AsiGI ACCGGT 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 677
AsuC2I CCSGG 2 cut(s) 675, 921
AsuHPI GGTGA 2 cut(s) 248, 938
AvaII GGWCC 1 cut(s) 677
BalI TGGCCA 1 cut(s) 792
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 550, 619
BceAI ACGGC 1 cut(s) 724
BciT130I CCWGG 1 cut(s) 829
BcnI CCSGG 2 cut(s) 675, 921
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 2 cut(s) 214, 904
BisI GCNGC 3 cut(s) 126, 798, 852
BlsI GCNGC 3 cut(s) 127, 799, 853
Bme1390I CCNGG 3 cut(s) 675, 829, 921
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 1 cut(s) 677
BmiI GGNNCC 1 cut(s) 1070
BmrFI CCNGG 3 cut(s) 675, 829, 921
BmsI GCATC 2 cut(s) 555, 1096
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 675, 921
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 4 cut(s) 371, 674, 788, 1102
Bse118I RCCGGY 3 cut(s) 230, 341, 1031
Bse1I ACTGG 1 cut(s) 763
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 1 cut(s) 829
BseGI GGATG 1 cut(s) 1111
BseLI CCNNNNNNNGG 4 cut(s) 371, 674, 788, 1102
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 2 cut(s) 122, 676
BseNI ACTGG 1 cut(s) 763
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 2 cut(s) 583, 600
Bsh1236I CGCG 2 cut(s) 272, 962
Bsh1285I CGRYCG 2 cut(s) 342, 1032
BshFI GGCC 3 cut(s) 711, 792, 1151
BshTI ACCGGT 1 cut(s) 230
BsiEI CGRYCG 2 cut(s) 342, 1032
BsiSI CCGG 5 cut(s) 231, 342, 675, 921, 1032
BslFI GGGAC 4 cut(s) 36, 514, 651, 1097
BslI CCNNNNNNNGG 4 cut(s) 371, 674, 788, 1102
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 4 cut(s) 36, 514, 651, 1097
BsmI GAATGC 3 cut(s) 10, 245, 935
BsnI GGCC 3 cut(s) 711, 792, 1151
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 4 cut(s) 67, 361, 778, 1051
BspACI CCGC 3 cut(s) 647, 798, 852
BspANI GGCC 3 cut(s) 711, 792, 1151
BspCNI CTCAG 2 cut(s) 123, 675
BspFNI CGCG 2 cut(s) 272, 962
BspLI GGNNCC 1 cut(s) 1070
BspPI GGATC 4 cut(s) 62, 356, 773, 1046
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 3 cut(s) 230, 341, 1031
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 1 cut(s) 763
BssAI RCCGGY 3 cut(s) 230, 341, 1031
BssMI GATC 4 cut(s) 67, 361, 778, 1051
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 6 cut(s) 170, 215, 505, 511, 628, 905
BstAPI GCANNNNNTGC 2 cut(s) 574, 815
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 527, 811
BstDEI CTNAG 3 cut(s) 131, 662, 819
BstF5I GGATG 1 cut(s) 1111
BstFNI CGCG 2 cut(s) 272, 962
BstKTI GATC 4 cut(s) 70, 364, 781, 1054
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 4 cut(s) 67, 361, 778, 1051
BstMCI CGRYCG 2 cut(s) 342, 1032
BstMWI GCNNNNNNNGC 8 cut(s) 125, 278, 574, 806, 815, 968, 1115, 1157
BstNI CCWGG 1 cut(s) 829
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 3 cut(s) 673, 827, 919
BstSFI CTRYAG 2 cut(s) 214, 904
BstUI CGCG 2 cut(s) 272, 962
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 778, 1051
BstXI CCANNNNNNTGG 2 cut(s) 305, 995
BstYI RGATCY 2 cut(s) 778, 1051
BsuRI GGCC 3 cut(s) 711, 792, 1151
BtsCI GGATG 1 cut(s) 1111
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 2 cut(s) 527, 811
Cfr10I RCCGGY 3 cut(s) 230, 341, 1031
Cfr13I GGNCC 1 cut(s) 677
CseI GACGC 2 cut(s) 261, 951
CsiI ACCWGGT 1 cut(s) 827
Csp6I GTAC 1 cut(s) 385
CspAI ACCGGT 1 cut(s) 230
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 3 cut(s) 131, 662, 819
DpnI GATC 4 cut(s) 69, 363, 780, 1053
DpnII GATC 4 cut(s) 67, 361, 778, 1051
DraI TTTAAA 1 cut(s) 459
EaeI YGGCCR 2 cut(s) 709, 790
Eco147I AGGCCT 1 cut(s) 1151
Eco47I GGWCC 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 827
FaqI GGGAC 4 cut(s) 36, 514, 651, 1097
FblI GTMKAC 3 cut(s) 210, 338, 1028
Fnu4HI GCNGC 3 cut(s) 126, 798, 852
FokI GGATG 1 cut(s) 1118
Fsp4HI GCNGC 3 cut(s) 126, 798, 852
FspBI CTAG 1 cut(s) 447
GluI GCNGC 3 cut(s) 126, 798, 852
GsaI CCCAGC 2 cut(s) 587, 604
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 3 cut(s) 711, 792, 1151
HapII CCGG 5 cut(s) 231, 342, 675, 921, 1032
HgaI GACGC 2 cut(s) 261, 951
HincII GTYRAC 3 cut(s) 211, 339, 1029
HindII GTYRAC 3 cut(s) 211, 339, 1029
HinfI GANTC 6 cut(s) 51, 286, 421, 538, 734, 976
HpaII CCGG 5 cut(s) 231, 342, 675, 921, 1032
HphI GGTGA 2 cut(s) 248, 938
Hpy166II GTNNAC 4 cut(s) 173, 211, 339, 1029
Hpy188I TCNGA 4 cut(s) 103, 132, 537, 733
Hpy188III TCNNGA 2 cut(s) 48, 1066
Hpy8I GTNNAC 4 cut(s) 173, 211, 339, 1029
HpyAV CCTTC 6 cut(s) 394, 398, 600, 690, 1079, 1129
HpyCH4III ACNGT 6 cut(s) 170, 215, 505, 511, 628, 905
HpyCH4V TGCA 6 cut(s) 33, 87, 149, 568, 1118, 1160
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 278, 574, 806, 815, 968, 1115, 1157
HpyF3I CTNAG 3 cut(s) 131, 662, 819
Kzo9I GATC 4 cut(s) 67, 361, 778, 1051
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 555, 1096
MabI ACCWGGT 1 cut(s) 827
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 505, 622
MalI GATC 4 cut(s) 69, 363, 780, 1053
MboI GATC 4 cut(s) 67, 361, 778, 1051
MboII GAAGA 2 cut(s) 116, 1061
MfeI CAATTG 2 cut(s) 869, 1167
MflI RGATCY 2 cut(s) 778, 1051
MlsI TGGCCA 1 cut(s) 792
MluI ACGCGT 2 cut(s) 270, 960
MluNI TGGCCA 1 cut(s) 792
MlyI GAGTC 2 cut(s) 45, 430
MnlI CCTC 4 cut(s) 401, 669, 681, 1095
Mox20I TGGCCA 1 cut(s) 792
MscI TGGCCA 1 cut(s) 792
MseI TTAA 2 cut(s) 458, 774
MslI CAYNNNNRTG 6 cut(s) 260, 350, 767, 792, 950, 1040
Msp20I TGGCCA 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 5 cut(s) 231, 342, 675, 921, 1032
MspR9I CCNGG 3 cut(s) 675, 829, 921
MunI CAATTG 2 cut(s) 869, 1167
Mva1269I GAATGC 3 cut(s) 10, 245, 935
MvaI CCWGG 1 cut(s) 829
MvnI CGCG 2 cut(s) 272, 962
MwoI GCNNNNNNNGC 8 cut(s) 125, 278, 574, 806, 815, 968, 1115, 1157
NciI CCSGG 2 cut(s) 675, 921
NdeII GATC 4 cut(s) 67, 361, 778, 1051
NlaIV GGNNCC 1 cut(s) 1070
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 577
PceI AGGCCT 1 cut(s) 1151
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 3 cut(s) 10, 245, 935
PfeI GAWTC 4 cut(s) 286, 538, 734, 976
PflMI CCANNNNNTGG 2 cut(s) 371, 788
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 3 cut(s) 127, 799, 853
PleI GAGTC 2 cut(s) 45, 429
PpsI GAGTC 2 cut(s) 45, 429
Psp6I CCWGG 1 cut(s) 827
PspFI CCCAGC 2 cut(s) 583, 600
PspGI CCWGG 1 cut(s) 827
PspN4I GGNNCC 1 cut(s) 1070
PspPI GGNCC 1 cut(s) 677
PsuI RGATCY 2 cut(s) 778, 1051
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 6 cut(s) 260, 350, 767, 792, 950, 1040
SalI GTCGAC 3 cut(s) 209, 337, 1027
SaqAI TTAA 2 cut(s) 458, 774
SatI GCNGC 3 cut(s) 126, 798, 852
Sau3AI GATC 4 cut(s) 67, 361, 778, 1051
Sau96I GGNCC 1 cut(s) 677
SchI GAGTC 2 cut(s) 45, 430
ScrFI CCNGG 3 cut(s) 675, 829, 921
SetI ASST 7 cut(s) 77, 100, 130, 326, 412, 830, 1016
SexAI ACCWGGT 1 cut(s) 827
SfaNI GCATC 2 cut(s) 555, 1096
SfcI CTRYAG 2 cut(s) 214, 904
SinI GGWCC 1 cut(s) 677
SmiMI CAYNNNNRTG 6 cut(s) 260, 350, 767, 792, 950, 1040
SseBI AGGCCT 1 cut(s) 1151
SsiI CCGC 3 cut(s) 647, 798, 852
SspMI CTAG 1 cut(s) 447
StuI AGGCCT 1 cut(s) 1151
StyD4I CCNGG 3 cut(s) 673, 827, 919
TaaI ACNGT 6 cut(s) 170, 215, 505, 511, 628, 905
TaqI TCGA 5 cut(s) 210, 338, 737, 755, 1028
TatI WGTACW 1 cut(s) 384
TauI GCSGC 2 cut(s) 800, 854
TfiI GAWTC 4 cut(s) 286, 538, 734, 976
Tru1I TTAA 2 cut(s) 458, 774
Tru9I TTAA 2 cut(s) 458, 774
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 9 cut(s) 17, 197, 278, 299, 779, 793, 968, 989, 1098
TspRI CASTG 1 cut(s) 627
Van91I CCANNNNNTGG 2 cut(s) 371, 788
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 2 cut(s) 89, 896
XceI RCATGY 1 cut(s) 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 1062
XmiI GTMKAC 3 cut(s) 210, 338, 1028
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.