Rh5CG112500

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000486
Physical Location & Seq
Forward (+)
9215815 .. 9220344
4530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG112500.1

Sequence Viewer

Length: 852 bp
ATGGACAATATTTTTTGGATAAAAAGAGATAGTCATACTCTGTCCACGGCAGACACTGCAGAGACTTGGTGTGTCCCCAATCCATCGTTGACCTATAAGAATCTGCAAGAGATAGAAACCTTTGCTTGCAATTATGTGGATTGCTCTTCAATTCACAGTGGGGGTCCATGCTTCAACCCCTTGAACGCCTTCATTCATGCAGCCTTTGCCATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATTACTGATCCAAGCTATGGGAACTGTCATTTTGCAGGTAGAGAAGAGAAGGTTTCCTCTTCAGCAGCTCTGAATACCTGGTGTGTGGCAAAGCCAACTGCCGCTGATAGTTTGCTACAATTGAACATTGACTTTGCTTGTAGTAAAGTCAACTGTAGTGTAATTGAACCCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCTTTTGGCAGAACAGATTTGAGCTGTTATTTTCAGTCGACCGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTCTATGAAGGGGTTGTCCTTGTGAGGGATGCTGTCCCTGCAAGTATCAAAATAAAGAAGGGGGAAAGTAAGGCCTTTTCTGCAACATCAATTGGACTTATGGTGGTGTGGTCGATCACTGGTTGTGGACTGGTGGCAGTGGCTGTATATGTTATGCTCTGGCTTCGTCAGAACCGCACACCAGTGGTGGGAGTTCCTGTGCACACATTGCCAGAGCCATTGTATTTGCGGCTGGAGCCATCAGCTCCCCCGCTTCCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

283

Amino Acids

30.8

Weight (kDa)

5.3

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 22 - 80 1.5e-13 X8 domain
X8 PF07983 115 - 185 4.4e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AccB7I CCANNNNNTGG 2 cut(s) 284, 578
AccI GTMKAC 1 cut(s) 545
AccII CGCG 1 cut(s) 479
AciI CCGC 4 cut(s) 369, 763, 817, 839
AclWI GGATC 2 cut(s) 269, 563
AcuI CTGAAG 1 cut(s) 312
AfiI CCNNNNNNNGG 4 cut(s) 284, 578, 613, 776
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 6 cut(s) 150, 175, 184, 391, 434, 566
AjnI CCWGG 1 cut(s) 344
AleI CACNNNNGTG 1 cut(s) 770
AluBI AGCT 4 cut(s) 282, 335, 531, 833
AluI AGCT 4 cut(s) 282, 335, 531, 833
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 1 cut(s) 56
Alw44I GTGCAC 1 cut(s) 788
AlwI GGATC 2 cut(s) 269, 563
AlwNI CAGNNNCTG 2 cut(s) 56, 731
AoxI GGCC 1 cut(s) 660
ApaLI GTGCAC 1 cut(s) 788
ApeKI GCWGC 2 cut(s) 200, 332
Asp700I GAANNNNTTC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 2 cut(s) 212, 344
BccI CCATC 2 cut(s) 91, 835
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 346
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 56
BfmI CTRYAG 2 cut(s) 57, 421
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 4 cut(s) 201, 333, 369, 818
BlsI GCNGC 4 cut(s) 202, 334, 370, 819
Bme1390I CCNGG 2 cut(s) 346, 438
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 165, 825
BmrFI CCNGG 2 cut(s) 346, 438
BmsI GCATC 1 cut(s) 607
BpmI CTGGAG 1 cut(s) 842
BpuMI CCSGG 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 771, 801
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 578, 613, 776
Bse118I RCCGGY 1 cut(s) 548
Bse1I ACTGG 4 cut(s) 238, 712, 723, 770
Bse3DI GCAATG 1 cut(s) 794
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 4 cut(s) 284, 578, 613, 776
BseMI GCAATG 1 cut(s) 794
BseNI ACTGG 4 cut(s) 238, 712, 723, 770
BseSI GKGCMC 1 cut(s) 792
BseXI GCAGC 2 cut(s) 212, 344
Bsh1236I CGCG 1 cut(s) 479
Bsh1285I CGRYCG 1 cut(s) 549
BshFI GGCC 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 549
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 2 cut(s) 438, 549
BslFI GGGAC 2 cut(s) 59, 608
BslI CCNNNNNNNGG 4 cut(s) 284, 578, 613, 776
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 59, 608
BsmI GAATGC 2 cut(s) 220, 452
BsnI GGCC 1 cut(s) 662
Bsp1286I GDGCHC 1 cut(s) 792
Bsp143I GATC 3 cut(s) 274, 568, 702
BspACI CCGC 4 cut(s) 369, 763, 817, 839
BspANI GGCC 1 cut(s) 662
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 2 cut(s) 165, 825
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 2 cut(s) 269, 563
BspQI GCTCTTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 794
BsrFI RCCGGY 1 cut(s) 548
BsrI ACTGG 4 cut(s) 238, 712, 723, 770
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 274, 568, 702
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 3 cut(s) 158, 293, 422
Bst6I CTCTTC 3 cut(s) 151, 306, 331
BstAPI GCANNNNNTGC 3 cut(s) 56, 206, 796
BstC8I GCNNGC 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 479
BstKTI GATC 3 cut(s) 277, 571, 705
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 274, 568, 702
BstMCI CGRYCG 1 cut(s) 549
BstMWI GCNNNNNNNGC 8 cut(s) 56, 206, 215, 485, 626, 668, 796, 823
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 344, 436
BstSFI CTRYAG 2 cut(s) 57, 421
BstSLI GKGCMC 1 cut(s) 792
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 212, 344
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 2 cut(s) 245, 512
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 1 cut(s) 662
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 622
BtsI GCAGTG 2 cut(s) 54, 732
BtsIMutI CAGTG 6 cut(s) 54, 163, 245, 705, 732, 777
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 2 cut(s) 56, 731
Cfr10I RCCGGY 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 468
CsiI ACCWGGT 1 cut(s) 344
CviAII CATG 5 cut(s) 168, 197, 211, 490, 553
DpnI GATC 3 cut(s) 276, 570, 704
DpnII GATC 3 cut(s) 274, 568, 702
Eam1104I CTCTTC 3 cut(s) 151, 306, 331
EarI CTCTTC 3 cut(s) 151, 306, 331
Eco147I AGGCCT 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 344
FaeI CATG 5 cut(s) 171, 200, 214, 493, 556
FaqI GGGAC 2 cut(s) 59, 608
FatI CATG 5 cut(s) 167, 196, 210, 489, 552
FauI CCCGC 1 cut(s) 846
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 4 cut(s) 201, 333, 369, 818
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 4 cut(s) 201, 333, 369, 818
GluI GCNGC 4 cut(s) 201, 333, 369, 818
GsuI CTGGAG 1 cut(s) 842
HaeIII GGCC 1 cut(s) 662
HapII CCGG 2 cut(s) 438, 549
HgaI GACGC 1 cut(s) 468
Hin1II CATG 5 cut(s) 171, 200, 214, 493, 556
HincII GTYRAC 3 cut(s) 90, 418, 546
HindII GTYRAC 3 cut(s) 90, 418, 546
HinfI GANTC 3 cut(s) 100, 258, 493
HpaII CCGG 2 cut(s) 438, 549
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 6 cut(s) 45, 90, 418, 546, 716, 790
Hpy188I TCNGA 2 cut(s) 339, 759
Hpy188III TCNNGA 3 cut(s) 227, 255, 579
Hpy8I GTNNAC 6 cut(s) 45, 90, 418, 546, 716, 790
HpyAV CCTTC 4 cut(s) 199, 310, 590, 640
HpyCH4III ACNGT 3 cut(s) 158, 293, 422
HpyCH4V TGCA 8 cut(s) 59, 106, 129, 200, 302, 629, 671, 790
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 206, 215, 485, 626, 668, 796, 823
Hsp92II CATG 5 cut(s) 171, 200, 214, 493, 556
Kzo9I GATC 3 cut(s) 274, 568, 702
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 229, 823, 838
Lsp1109I GCAGC 2 cut(s) 212, 344
LweI GCATC 1 cut(s) 607
MabI ACCWGGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 276, 570, 704
MboI GATC 3 cut(s) 274, 568, 702
MboII GAAGA 4 cut(s) 138, 318, 323, 578
MfeI CAATTG 2 cut(s) 386, 678
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 792
MluCI AATT 6 cut(s) 130, 150, 386, 429, 452, 678
MluI ACGCGT 1 cut(s) 477
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 2 cut(s) 334, 606
MroXI GAANNNNTTC 1 cut(s) 188
MslI CAYNNNNRTG 3 cut(s) 467, 557, 770
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 438, 549
MspR9I CCNGG 2 cut(s) 346, 438
MunI CAATTG 2 cut(s) 386, 678
Mva1269I GAATGC 2 cut(s) 220, 452
MvaI CCWGG 1 cut(s) 346
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 8 cut(s) 56, 206, 215, 485, 626, 668, 796, 823
NciI CCSGG 1 cut(s) 438
NdeII GATC 3 cut(s) 274, 568, 702
NlaIII CATG 5 cut(s) 171, 200, 214, 493, 556
NlaIV GGNNCC 2 cut(s) 165, 825
OliI CACNNNNGTG 1 cut(s) 770
PceI AGGCCT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 151
PctI GAATGC 2 cut(s) 220, 452
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 100, 493
PflMI CCANNNNNTGG 2 cut(s) 284, 578
PkrI GCNGC 4 cut(s) 202, 334, 370, 819
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 165, 825
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 2 cut(s) 56, 731
PsuI RGATCY 1 cut(s) 568
RseI CAYNNNNRTG 3 cut(s) 467, 557, 770
SalI GTCGAC 1 cut(s) 544
SapI GCTCTTC 1 cut(s) 151
SatI GCNGC 4 cut(s) 201, 333, 369, 818
Sau3AI GATC 3 cut(s) 274, 568, 702
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 346, 438
SduI GDGCHC 1 cut(s) 792
SetI ASST 9 cut(s) 95, 122, 284, 307, 321, 337, 347, 533, 835
SexAI ACCWGGT 1 cut(s) 344
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 2 cut(s) 57, 421
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 3 cut(s) 467, 557, 770
Sse9I AATT 6 cut(s) 130, 150, 386, 429, 452, 678
SseBI AGGCCT 1 cut(s) 662
SsiI CCGC 4 cut(s) 369, 763, 817, 839
SspI AATATT 1 cut(s) 10
StuI AGGCCT 1 cut(s) 662
StyD4I CCNGG 2 cut(s) 344, 436
TaaI ACNGT 3 cut(s) 158, 293, 422
TaqI TCGA 2 cut(s) 545, 701
TasI AATT 6 cut(s) 130, 150, 386, 429, 452, 678
TauI GCSGC 2 cut(s) 371, 820
TfiI GAWTC 2 cut(s) 100, 493
TscAI CASTG 6 cut(s) 61, 163, 245, 712, 732, 777
TseI GCWGC 2 cut(s) 200, 332
TspDTI ATGAA 6 cut(s) 181, 185, 227, 485, 506, 609
TspRI CASTG 6 cut(s) 61, 163, 245, 712, 732, 777
Van91I CCANNNNNTGG 2 cut(s) 284, 578
VneI GTGCAC 1 cut(s) 788
VpaK11BI GGWCC 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.