Rorug05G0008700

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000486
Physical Location & Seq
Reverse (-)
488268 .. 490907
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0008700.1

Sequence Viewer

Length: 681 bp
ATGGCTTTTCAGTCCGAGGAAGAAAAGACTGAGGATTATCTTTTCAAGATTGTTTTAATTGGTGACTCGGCCGTTGGAAAATCTAATTTGCTGGCAAGATTTGCTAGAAATGAGTTCTTCCCTAATTCAAAGTCAACTATAGGAGTAGAGTTCCAAACCCAAAAGATCGTTATCGATGGTAAAGAAGTCAAAGCACAGATATGGGACACGGCTGGTCAAGAGCGGTTCAGGGCTGTTACATCTGCATATTACAGAGGTGCTGTTGGTGCTCTTTTGGTTTATGATATCAGTAGGCATCAGACATTTGATAGTATCGGCAGATGGCTTAATGAGCTCCACACTCACTCCGACATGAATGTTGTGACGATACTTGTCGGTAACAAGTCAGATCTTAAGGATGCCAGGGAGGTACCCACGTCTGAAGGCAAAGCCTTGGCAGAAGCACAGGGTTTGTTTTTTATGGAAACATCTGCTCTCGACTCATCCAATGTTGCTGCCGCCTTTCAGACGGTAGTGAAGGAGATCTACAGTATACTAAGTCGAAAAGTAATGATGTCCCAGGAGCTCAAGAAACAGGACCCTAGCTGGGTGGGGAGTGGCAAGACGGTGCTTTTACAGGGAGATGGGAACGAAGAAGCAGCAAGTACAGAGCCTAAAAAAGGTGGGTGCTGTTCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

226

Amino Acids

24.86

Weight (kDa)

5.52

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 14 - 172 3.9e-15 ADP-ribosylation factor family
Ras PF00071 16 - 176 7.9e-62 Ras family
Roc PF08477 16 - 130 3.8e-34 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 532
AciI CCGC 2 cut(s) 223, 498
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 2 cut(s) 411, 646
AfiI CCNNNNNNNGG 2 cut(s) 586, 659
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 2 cut(s) 46, 129
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 2 cut(s) 401, 558
AluBI AGCT 3 cut(s) 334, 565, 585
AluI AGCT 3 cut(s) 334, 565, 585
Alw21I GWGCWC 3 cut(s) 271, 336, 567
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 494, 638
Asp718I GGTACC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 577
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 577
BaeI ACNNNNGTAYC 2 cut(s) 401, 434
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 2 cut(s) 336, 567
BarI GAAGNNNNNNTAC 2 cut(s) 509, 541
Bbv12I GWGCWC 3 cut(s) 271, 336, 567
BbvI GCAGC 2 cut(s) 481, 650
BccI CCATC 3 cut(s) 170, 315, 617
BceAI ACGGC 2 cut(s) 56, 225
BciT130I CCWGG 2 cut(s) 403, 560
BfaI CTAG 2 cut(s) 105, 582
BfmI CTRYAG 2 cut(s) 138, 526
BfrI CTTAAG 1 cut(s) 392
BglII AGATCT 2 cut(s) 388, 522
BisI GCNGC 3 cut(s) 495, 498, 639
BlsI GCNGC 3 cut(s) 496, 499, 640
Bme1390I CCNGG 2 cut(s) 403, 560
Bme18I GGWCC 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 2 cut(s) 411, 579
BmrFI CCNGG 2 cut(s) 403, 560
BmsI GCATC 2 cut(s) 304, 388
BpuEI CTTGAG 1 cut(s) 551
Bsa29I ATCGAT 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 15, 402, 432, 558
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 586, 659
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 2 cut(s) 403, 560
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 4 cut(s) 15, 402, 432, 558
BseGI GGATG 2 cut(s) 403, 482
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 586, 659
BseMII CTCAG 1 cut(s) 21
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 481, 650
BseYI CCCAGC 1 cut(s) 585
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 409
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 271, 336, 567
BslFI GGGAC 2 cut(s) 218, 541
BslI CCNNNNNNNGG 2 cut(s) 586, 659
BsmFI GGGAC 2 cut(s) 218, 541
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 271, 336, 567
Bsp143I GATC 3 cut(s) 165, 388, 522
BspACI CCGC 2 cut(s) 223, 498
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 411, 579
BspT107I GGYRCC 1 cut(s) 409
BspTI CTTAAG 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 223
BssECI CCNNGG 4 cut(s) 15, 402, 432, 558
BssMI GATC 3 cut(s) 165, 388, 522
BssNAI GTATAC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 432
Bst1107I GTATAC 1 cut(s) 533
Bst2UI CCWGG 2 cut(s) 403, 560
Bst4CI ACNGT 3 cut(s) 511, 530, 607
BstAFI CTTAAG 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 30, 536, 678
BstENI CCTNNNNNAGG 1 cut(s) 657
BstF5I GGATG 2 cut(s) 403, 482
BstKTI GATC 3 cut(s) 168, 391, 525
BstMBI GATC 3 cut(s) 165, 388, 522
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 101, 266, 331
BstNI CCWGG 2 cut(s) 403, 560
BstSCI CCNGG 2 cut(s) 401, 558
BstSFI CTRYAG 2 cut(s) 138, 526
BstV1I GCAGC 2 cut(s) 481, 650
BstX2I RGATCY 2 cut(s) 388, 522
BstYI RGATCY 2 cut(s) 388, 522
BstZ17I GTATAC 1 cut(s) 533
BstZI CGGCCG 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 174
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 2 cut(s) 403, 482
Cac8I GCNNGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 577
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 2 cut(s) 410, 645
CviAII CATG 1 cut(s) 352
CviQI GTAC 2 cut(s) 410, 645
DdeI CTNAG 3 cut(s) 30, 536, 678
DpnI GATC 3 cut(s) 167, 390, 524
DpnII GATC 3 cut(s) 165, 388, 522
EaeI YGGCCR 1 cut(s) 69
EagI CGGCCG 1 cut(s) 69
Ecl136II GAGCTC 2 cut(s) 334, 565
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 2 cut(s) 336, 567
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 577
Eco52I CGGCCG 1 cut(s) 69
Eco53kI GAGCTC 2 cut(s) 334, 565
Eco57I CTGAAG 1 cut(s) 441
EcoICRI GAGCTC 2 cut(s) 334, 565
EcoNI CCTNNNNNAGG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 401, 558
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 2 cut(s) 336, 567
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 1 cut(s) 355
FaiI YATR 7 cut(s) 140, 202, 247, 282, 353, 461, 533
FaqI GGGAC 2 cut(s) 218, 541
FatI CATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 3 cut(s) 495, 498, 639
FokI GGATG 2 cut(s) 410, 469
FriOI GRGCYC 2 cut(s) 336, 567
Fsp4HI GCNGC 3 cut(s) 495, 498, 639
FspBI CTAG 2 cut(s) 105, 582
GluI GCNGC 3 cut(s) 495, 498, 639
GsaI CCCAGC 1 cut(s) 589
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 2 cut(s) 65, 479
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 135, 533
Hpy188I TCNGA 6 cut(s) 16, 300, 349, 388, 421, 507
Hpy188III TCNNGA 4 cut(s) 46, 218, 476, 568
Hpy8I GTNNAC 2 cut(s) 135, 533
HpyAV CCTTC 2 cut(s) 416, 511
HpyCH4III ACNGT 3 cut(s) 511, 530, 607
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 266, 331
HpyF3I CTNAG 3 cut(s) 30, 536, 678
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 1 cut(s) 355
KpnI GGTACC 1 cut(s) 413
Kzo9I GATC 3 cut(s) 165, 388, 522
LmnI GCTCC 2 cut(s) 339, 562
Lsp1109I GCAGC 2 cut(s) 481, 650
LweI GCATC 2 cut(s) 304, 388
MaeI CTAG 2 cut(s) 105, 582
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 4 cut(s) 62, 235, 361, 377
MalI GATC 3 cut(s) 167, 390, 524
MbiI CCGCTC 1 cut(s) 223
MboI GATC 3 cut(s) 165, 388, 522
MboII GAAGA 3 cut(s) 32, 109, 644
MflI RGATCY 2 cut(s) 388, 522
MhlI GDGCHC 3 cut(s) 271, 336, 567
MluCI AATT 3 cut(s) 57, 85, 124
MlyI GAGTC 2 cut(s) 59, 473
MmeI TCCRAC 2 cut(s) 55, 372
MnlI CCTC 4 cut(s) 10, 25, 248, 400
MseI TTAA 3 cut(s) 56, 327, 393
MslI CAYNNNNRTG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 392
MspR9I CCNGG 2 cut(s) 403, 560
MvaI CCWGG 2 cut(s) 403, 560
MwoI GCNNNNNNNGC 3 cut(s) 101, 266, 331
NdeII GATC 3 cut(s) 165, 388, 522
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 2 cut(s) 411, 579
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 2 cut(s) 62, 361
PkrI GCNGC 3 cut(s) 496, 499, 640
PleI GAGTC 2 cut(s) 59, 473
PpsI GAGTC 2 cut(s) 59, 473
PpuMI RGGWCCY 1 cut(s) 577
Psp124BI GAGCTC 2 cut(s) 336, 567
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 401, 558
PspFI CCCAGC 1 cut(s) 585
PspGI CCWGG 2 cut(s) 401, 558
PspN4I GGNNCC 2 cut(s) 411, 579
PspPI GGNCC 1 cut(s) 577
PspPPI RGGWCCY 1 cut(s) 577
PsuI RGATCY 2 cut(s) 388, 522
RsaI GTAC 2 cut(s) 411, 646
RsaNI GTAC 2 cut(s) 410, 645
RseI CAYNNNNRTG 1 cut(s) 199
SacI GAGCTC 2 cut(s) 336, 567
SaqAI TTAA 3 cut(s) 56, 327, 393
SatI GCNGC 3 cut(s) 495, 498, 639
Sau3AI GATC 3 cut(s) 165, 388, 522
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 2 cut(s) 59, 473
ScrFI CCNGG 2 cut(s) 403, 560
SduI GDGCHC 3 cut(s) 271, 336, 567
SetI ASST 7 cut(s) 259, 336, 411, 419, 567, 587, 664
SfaNI GCATC 2 cut(s) 304, 388
SfcI CTRYAG 2 cut(s) 138, 526
SinI GGWCC 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 392, 566
SmoI CTYRAG 2 cut(s) 392, 566
Sse9I AATT 3 cut(s) 57, 85, 124
SsiI CCGC 2 cut(s) 223, 498
SspMI CTAG 2 cut(s) 105, 582
SstI GAGCTC 2 cut(s) 336, 567
StyD4I CCNGG 2 cut(s) 401, 558
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 511, 530, 607
TaiI ACGT 1 cut(s) 419
TaqI TCGA 3 cut(s) 174, 477, 541
TasI AATT 3 cut(s) 57, 85, 124
TatI WGTACW 1 cut(s) 644
TauI GCSGC 1 cut(s) 500
Tru1I TTAA 3 cut(s) 56, 327, 393
Tru9I TTAA 3 cut(s) 56, 327, 393
TseFI GTSAC 2 cut(s) 62, 361
TseI GCWGC 2 cut(s) 494, 638
Tsp45I GTSAC 2 cut(s) 62, 361
TspDTI ATGAA 2 cut(s) 368, 663
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 577
XagI CCTNNNNNAGG 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 2 cut(s) 105, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.