FvH4_3g06020

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000486
Physical Location & Seq
Reverse (-)
3492107 .. 3494965
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06020.t3

Sequence Viewer

Length: 912 bp
ATGGCTGCTGTCCTTCCAGCTCTTCTTGTCGCGGCCTTCCTCGCTCTCTCGAACCTCGAGCTCCGCGCCATTGCTCATTCTCCAGGACATAGCCATGCCGCTTTTACGGCAGACTTTGCTAAGACATGGTGCGTCCCGAATCCATCGTTGAGCTACGAGACGCTGCAGGACATAACAACTTATGCCTGCAATTATGTGGATTGCTCAGCAATTTACAGTGGGGGTCCATGCTTTGATCCCTCGAATGACTTGAGTCATGCAGCCTTTGCCATGAATGCTTATTATCAAGAGCAACACGATTGTTTTGGTGGCTCTGGACTCATAGCTATCACTGATCCGAGCTACGGGAACTGCTATTTTGTAGGTAGAGAAGAGATGGTTTCTTCTACAGCAGCTCCGAATACCTGGTGTGTGGCAAAGCCAACTGTCGCAGATAGTTTGCTACAATTGAACATTGACTTTGCTTGTAGTAGAGTCAACTGTAGTGTAATTGAACCCGGTGGTGAATGCCAATTACCAGACACTATAATGAAACACACGTCTGTTGCCATGAATCTCTACTACCAATCTTTTGGTAGAACAGATTTGAGCTGTTATTTTCAGTCGACTGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTTTATGAAAGGGTTGTCCTTGTGGCGGATGCTGTCCCTGCAAGTATCAAAATAAAGAAGGGGGAAAGTGGGGCTTTTTCTGCAACATCAATTGGACTTATGGTGGTGTGGTCGATCACTGGTTGTGGGCTAATGGCAGTGGCTGTATATGTTATGCTCTGGCTTCGGAAGACCCGCTCACCAGTGGTGGGAGTTCCCGTGCACACATTGCCTGAGCCATTGTATTCACGGCCAGAGCCATCAGCTCCCCCACTTCCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

304

Amino Acids

32.45

Weight (kDa)

5.04

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 45 - 115 7.4e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 638
AccBSI CCGCTC 1 cut(s) 825
AccI GTMKAC 1 cut(s) 605
AccII CGCG 2 cut(s) 32, 66
AciI CCGC 5 cut(s) 32, 64, 99, 674, 823
AclWI GGATC 3 cut(s) 230, 329, 623
AcoI YGGCCR 1 cut(s) 878
AfiI CCNNNNNNNGG 4 cut(s) 344, 638, 673, 836
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 3 cut(s) 451, 494, 626
AjiI CACGTC 1 cut(s) 540
AjnI CCWGG 2 cut(s) 82, 404
AluBI AGCT 8 cut(s) 20, 61, 153, 326, 342, 395, 591, 893
AluI AGCT 8 cut(s) 20, 61, 153, 326, 342, 395, 591, 893
Alw21I GWGCWC 2 cut(s) 63, 852
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 848
AlwI GGATC 3 cut(s) 230, 329, 623
AlwNI CAGNNNCTG 1 cut(s) 791
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 2 cut(s) 33, 878
ApaLI GTGCAC 1 cut(s) 848
ApeKI GCWGC 4 cut(s) 5, 163, 260, 392
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 515, 819
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 852
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 824
Bbv12I GWGCWC 2 cut(s) 63, 852
BbvI GCAGC 3 cut(s) 150, 272, 404
BccI CCATC 3 cut(s) 151, 370, 895
BceAI ACGGC 2 cut(s) 123, 893
BciT130I CCWGG 2 cut(s) 84, 406
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 152
BfmI CTRYAG 3 cut(s) 164, 387, 481
BisI GCNGC 6 cut(s) 6, 33, 99, 164, 261, 393
BlpI GCTNAGC 1 cut(s) 205
BlsI GCNGC 6 cut(s) 7, 34, 100, 165, 262, 394
Bme1390I CCNGG 3 cut(s) 84, 406, 498
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 56
BmgBI CACGTC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 3 cut(s) 84, 406, 498
BmsI GCATC 1 cut(s) 667
BoxI GACNNNNGTC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 824
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 498
BsaXI ACNNNNNCTCC 4 cut(s) 379, 409, 831, 861
Bsc4I CCNNNNNNNGG 4 cut(s) 344, 638, 673, 836
Bse1I ACTGG 3 cut(s) 613, 772, 830
Bse3DI GCAATG 2 cut(s) 69, 854
BseBI CCWGG 2 cut(s) 84, 406
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 4 cut(s) 344, 638, 673, 836
BseMI GCAATG 2 cut(s) 69, 854
BseMII CTCAG 2 cut(s) 219, 852
BseNI ACTGG 3 cut(s) 613, 772, 830
BseSI GKGCMC 1 cut(s) 852
BseXI GCAGC 3 cut(s) 150, 272, 404
Bsh1236I CGCG 2 cut(s) 32, 66
BshFI GGCC 2 cut(s) 35, 880
BsiHKAI GWGCWC 2 cut(s) 63, 852
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 498
BslFI GGGAC 2 cut(s) 119, 668
BslI CCNNNNNNNGG 4 cut(s) 344, 638, 673, 836
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 119, 668
BsmI GAATGC 2 cut(s) 280, 512
BsnI GGCC 2 cut(s) 35, 880
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 63, 852
Bsp143I GATC 4 cut(s) 235, 334, 628, 762
Bsp1720I GCTNAGC 1 cut(s) 205
BspACI CCGC 5 cut(s) 32, 64, 99, 674, 823
BspANI GGCC 2 cut(s) 35, 880
BspCNI CTCAG 2 cut(s) 218, 853
BspFNI CGCG 2 cut(s) 32, 66
BspLI GGNNCC 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 168
BspPI GGATC 3 cut(s) 230, 329, 623
BspQI GCTCTTC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 825
BsrDI GCAATG 2 cut(s) 69, 854
BsrI ACTGG 3 cut(s) 613, 772, 830
BssMI GATC 4 cut(s) 235, 334, 628, 762
Bst2UI CCWGG 2 cut(s) 84, 406
Bst4CI ACNGT 3 cut(s) 218, 427, 482
Bst6I CTCTTC 2 cut(s) 27, 366
BstAPI GCANNNNNTGC 3 cut(s) 116, 266, 856
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 120, 205, 861
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 2 cut(s) 32, 66
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 4 cut(s) 238, 337, 631, 765
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 235, 334, 628, 762
BstMWI GCNNNNNNNGC 8 cut(s) 41, 107, 116, 266, 275, 686, 728, 856
BstNI CCWGG 2 cut(s) 84, 406
BstPAI GACNNNNGTC 1 cut(s) 252
BstSCI CCNGG 3 cut(s) 82, 404, 496
BstSFI CTRYAG 3 cut(s) 164, 387, 481
BstSLI GKGCMC 1 cut(s) 852
BstUI CGCG 2 cut(s) 32, 66
BstV1I GCAGC 3 cut(s) 150, 272, 404
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 1 cut(s) 628
BstXI CCANNNNNNTGG 1 cut(s) 572
BstYI RGATCY 1 cut(s) 628
BsuRI GGCC 2 cut(s) 35, 880
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 1 cut(s) 682
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 5 cut(s) 223, 330, 765, 792, 837
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 791
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 2 cut(s) 121, 169
CsiI ACCWGGT 1 cut(s) 404
CviAII CATG 7 cut(s) 95, 126, 228, 257, 271, 550, 613
DdeI CTNAG 3 cut(s) 120, 205, 861
DpnI GATC 4 cut(s) 237, 336, 630, 764
DpnII GATC 4 cut(s) 235, 334, 628, 762
EaeI YGGCCR 1 cut(s) 878
Eam1104I CTCTTC 2 cut(s) 27, 366
EarI CTCTTC 2 cut(s) 27, 366
EciI GGCGGA 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 82, 404
EcoT38I GRGCYC 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 7 cut(s) 98, 129, 231, 260, 274, 553, 616
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 2 cut(s) 119, 668
FatI CATG 7 cut(s) 94, 125, 227, 256, 270, 549, 612
FauI CCCGC 1 cut(s) 830
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 6 cut(s) 6, 33, 99, 164, 261, 393
FokI GGATG 1 cut(s) 689
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 6 cut(s) 6, 33, 99, 164, 261, 393
GlaI GCGC 1 cut(s) 67
GluI GCNGC 6 cut(s) 6, 33, 99, 164, 261, 393
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 2 cut(s) 35, 880
HapII CCGG 1 cut(s) 498
HgaI GACGC 2 cut(s) 121, 169
HhaI GCGC 1 cut(s) 68
Hin1II CATG 7 cut(s) 98, 129, 231, 260, 274, 553, 616
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 2 cut(s) 478, 606
HindII GTYRAC 2 cut(s) 478, 606
HinfI GANTC 5 cut(s) 139, 253, 318, 474, 553
HpaII CCGG 1 cut(s) 498
HphI GGTGA 2 cut(s) 515, 819
Hpy166II GTNNAC 3 cut(s) 478, 606, 850
Hpy188I TCNGA 3 cut(s) 339, 399, 816
Hpy188III TCNNGA 5 cut(s) 49, 136, 287, 315, 639
Hpy8I GTNNAC 3 cut(s) 478, 606, 850
HpyAV CCTTC 3 cut(s) 23, 46, 700
HpyCH4III ACNGT 3 cut(s) 218, 427, 482
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 6 cut(s) 166, 189, 260, 689, 731, 850
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 107, 116, 266, 275, 686, 728, 856
HpyF3I CTNAG 3 cut(s) 120, 205, 861
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 7 cut(s) 98, 129, 231, 260, 274, 553, 616
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 235, 334, 628, 762
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 66, 400, 898
Lsp1109I GCAGC 3 cut(s) 150, 272, 404
LweI GCATC 1 cut(s) 667
MabI ACCWGGT 1 cut(s) 404
MaeII ACGT 1 cut(s) 539
MalI GATC 4 cut(s) 237, 336, 630, 764
MbiI CCGCTC 1 cut(s) 825
MboI GATC 4 cut(s) 235, 334, 628, 762
MboII GAAGA 5 cut(s) 14, 375, 383, 638, 829
MfeI CAATTG 2 cut(s) 446, 738
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 2 cut(s) 63, 852
MluCI AATT 6 cut(s) 190, 210, 446, 489, 512, 738
MlyI GAGTC 3 cut(s) 262, 312, 483
MnlI CCTC 3 cut(s) 50, 65, 250
MslI CAYNNNNRTG 3 cut(s) 93, 527, 617
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 3 cut(s) 84, 406, 498
MunI CAATTG 2 cut(s) 446, 738
Mva1269I GAATGC 2 cut(s) 280, 512
MvaI CCWGG 2 cut(s) 84, 406
MvnI CGCG 2 cut(s) 32, 66
MwoI GCNNNNNNNGC 8 cut(s) 41, 107, 116, 266, 275, 686, 728, 856
NciI CCSGG 1 cut(s) 498
NdeII GATC 4 cut(s) 235, 334, 628, 762
NlaIII CATG 7 cut(s) 98, 129, 231, 260, 274, 553, 616
NlaIV GGNNCC 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 2 cut(s) 280, 512
PfeI GAWTC 2 cut(s) 139, 553
PflMI CCANNNNNTGG 1 cut(s) 638
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 6 cut(s) 7, 34, 100, 165, 262, 394
PleI GAGTC 3 cut(s) 261, 312, 482
PpsI GAGTC 3 cut(s) 261, 312, 482
PshAI GACNNNNGTC 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 82, 404
PspGI CCWGG 2 cut(s) 82, 404
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 56
PstI CTGCAG 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 1 cut(s) 628
RseI CAYNNNNRTG 3 cut(s) 93, 527, 617
SacI GAGCTC 1 cut(s) 63
SalI GTCGAC 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 27
SatI GCNGC 6 cut(s) 6, 33, 99, 164, 261, 393
Sau3AI GATC 4 cut(s) 235, 334, 628, 762
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 3 cut(s) 262, 312, 483
ScrFI CCNGG 3 cut(s) 84, 406, 498
SduI GDGCHC 2 cut(s) 63, 852
SexAI ACCWGGT 1 cut(s) 404
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 3 cut(s) 164, 387, 481
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 93, 527, 617
SmlI CTYRAG 2 cut(s) 56, 250
SmoI CTYRAG 2 cut(s) 56, 250
Sse9I AATT 6 cut(s) 190, 210, 446, 489, 512, 738
SsiI CCGC 5 cut(s) 32, 64, 99, 674, 823
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 82, 404, 496
TaaI ACNGT 3 cut(s) 218, 427, 482
TaiI ACGT 1 cut(s) 542
TaqI TCGA 5 cut(s) 50, 57, 242, 605, 761
TasI AATT 6 cut(s) 190, 210, 446, 489, 512, 738
TauI GCSGC 2 cut(s) 35, 101
TfiI GAWTC 2 cut(s) 139, 553
TscAI CASTG 5 cut(s) 223, 337, 772, 792, 837
TseI GCWGC 4 cut(s) 5, 163, 260, 392
TspDTI ATGAA 4 cut(s) 287, 545, 566, 669
TspRI CASTG 5 cut(s) 223, 337, 772, 792, 837
Van91I CCANNNNNTGG 1 cut(s) 638
VneI GTGCAC 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.