FvH4_3g06030

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000486
Physical Location & Seq
Reverse (-)
3495353 .. 3497989
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06030.t2

Sequence Viewer

Length: 669 bp
ATGGCTAAAGCGGAAAGCTCTTTCTCTATCCTCATCCTTTTCCTTTTGCAGGTTCAGTTTTTCTACAAAGGACAAGCGGAAGCTAGCACAGTGGAGTGGGTGAAGACATGGTGCATTGCAAAGCCTTCAACGAGTAAAGAAGCACTGCAGAATAATCTAGAATATGCCTGCAGTAACATAAATGCAATGGATTGCACAGCAATTCAAGAAGGAGGTCCCTGCTCCGAACCTAATGATCTTTTGCTTTACGCTTCATTTGCCATGAATGCTTACTACCAGGCCAAAGGGAGGCACTACTGGAACTGTGACTTCAGCAACTCTGGTCTCATTTCCTTGACAGATCCAAGTTATGGTAGCTGCACATATGAAGGGGGAGAGACAGCGGTGGATGACTCAAATTCGGGAAAGTGGTGTGTAGCAAGCCCTTCAGCAAGTGATGATCAGATACAAGCTAACATTGATTTTGCTTGTGACAAGGTAGACTGTAGCATTATAAGTTCTGGTGGTGCTTGTTACGAGCCAAACACTGTCAAGAACCGCGCCTCAGTTGCCATGAATCTTTACTATCAACAAACAGGTCAAGCGGATACGAGTTGTGATTTTAATGGCAGTGGGAACATTATTAGAACCGATCCAAGTTATGGTGATTGCAAATTCAAGTATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

223

Amino Acids

24.2

Weight (kDa)

4.4

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 36 - 108 2.4e-19 X8 domain
X8 PF07983 136 - 205 3.2e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 40
AccB7I CCANNNNNTGG 2 cut(s) 350, 641
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 540
AciI CCGC 5 cut(s) 11, 77, 383, 538, 584
AclWI GGATC 2 cut(s) 335, 626
AcsI RAATTY 2 cut(s) 397, 653
AcuI CTGAAG 2 cut(s) 295, 411
AfiI CCNNNNNNNGG 4 cut(s) 49, 288, 350, 641
AgsI TTSAA 3 cut(s) 129, 206, 658
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 5 cut(s) 18, 83, 357, 452, 666
AluI AGCT 5 cut(s) 18, 83, 357, 452, 666
Alw26I GTCTC 2 cut(s) 329, 371
AlwI GGATC 2 cut(s) 335, 626
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 2 cut(s) 397, 653
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 112, 656
AsuNHI GCTAGC 1 cut(s) 83
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 580
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 329, 371
BfaI CTAG 2 cut(s) 84, 158
BfmI CTRYAG 3 cut(s) 146, 169, 484
BfuAI ACCTGC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 580
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 278
BmtI GCTAGC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 329
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 288, 350, 641
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 2 cut(s) 114, 192
BseBI CCWGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 33, 394
BseLI CCNNNNNNNGG 4 cut(s) 49, 288, 350, 641
BseMI GCAATG 2 cut(s) 114, 192
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 4 cut(s) 49, 288, 350, 641
BsmAI GTCTC 2 cut(s) 329, 371
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 329
Bsp143I GATC 4 cut(s) 235, 340, 439, 631
BspACI CCGC 5 cut(s) 11, 77, 383, 538, 584
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 557
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 2 cut(s) 150, 173
BspMI ACCTGC 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 2 cut(s) 335, 626
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 2 cut(s) 114, 192
BsrI ACTGG 1 cut(s) 302
BssMI GATC 4 cut(s) 235, 340, 439, 631
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 4 cut(s) 91, 305, 485, 529
BstC8I GCNNGC 3 cut(s) 85, 169, 421
BstDEI CTNAG 1 cut(s) 544
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 33, 394
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 4 cut(s) 238, 343, 442, 634
BstMAI GTCTC 2 cut(s) 329, 371
BstMBI GATC 4 cut(s) 235, 340, 439, 631
BstMWI GCNNNNNNNGC 3 cut(s) 257, 266, 548
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 3 cut(s) 146, 169, 484
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuI GTATCC 1 cut(s) 580
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 33, 394
BtsI GCAGTG 2 cut(s) 143, 616
BtsIMutI CAGTG 4 cut(s) 96, 143, 525, 616
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 3 cut(s) 85, 169, 421
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 215
CviAII CATG 3 cut(s) 108, 262, 553
DdeI CTNAG 1 cut(s) 544
DpnI GATC 4 cut(s) 237, 342, 441, 633
DpnII GATC 4 cut(s) 235, 340, 439, 631
Eco31I GGTCTC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 295, 411
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 111, 265, 556
FaqI GGGAC 1 cut(s) 201
FatI CATG 3 cut(s) 107, 261, 552
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 2 cut(s) 20, 401
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 2 cut(s) 84, 158
GlaI GCGC 1 cut(s) 541
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 1 cut(s) 281
HhaI GCGC 1 cut(s) 542
Hin1II CATG 3 cut(s) 111, 265, 556
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HinfI GANTC 2 cut(s) 392, 556
HphI GGTGA 2 cut(s) 112, 656
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 226, 444
Hpy188III TCNNGA 4 cut(s) 158, 206, 402, 532
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 135, 203, 362, 435
HpyCH4III ACNGT 4 cut(s) 91, 305, 485, 529
HpyCH4V TGCA 9 cut(s) 49, 114, 119, 148, 171, 185, 195, 360, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 266, 548
HpyF3I CTNAG 1 cut(s) 544
Hsp92II CATG 3 cut(s) 111, 265, 556
HspAI GCGC 1 cut(s) 540
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 4 cut(s) 235, 340, 439, 631
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 9 cut(s) 35, 181, 232, 263, 283, 290, 306, 486, 561
Lsp1109I GCAGC 1 cut(s) 344
MaeI CTAG 2 cut(s) 84, 158
MaeIII GTNAC 4 cut(s) 173, 305, 470, 512
MalI GATC 4 cut(s) 237, 342, 441, 633
MboI GATC 4 cut(s) 235, 340, 439, 631
MboII GAAGA 1 cut(s) 115
MflI RGATCY 1 cut(s) 340
MluCI AATT 3 cut(s) 201, 397, 653
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 4 cut(s) 41, 206, 282, 553
MseI TTAA 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 3 cut(s) 257, 266, 548
NdeI CATATG 1 cut(s) 364
NdeII GATC 4 cut(s) 235, 340, 439, 631
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 3 cut(s) 111, 265, 556
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 305, 470
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 556
PflMI CCANNNNNTGG 2 cut(s) 350, 641
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PpuMI RGGWCCY 1 cut(s) 215
PsiI TTATAA 1 cut(s) 494
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 2 cut(s) 150, 173
PsuI RGATCY 1 cut(s) 340
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 4 cut(s) 235, 340, 439, 631
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 278
SfcI CTRYAG 3 cut(s) 146, 169, 484
SinI GGWCC 1 cut(s) 215
Sse9I AATT 3 cut(s) 201, 397, 653
SsiI CCGC 5 cut(s) 11, 77, 383, 538, 584
SspMI CTAG 2 cut(s) 84, 158
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 4 cut(s) 91, 305, 485, 529
TasI AATT 3 cut(s) 201, 397, 653
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 4 cut(s) 96, 150, 532, 616
TseFI GTSAC 2 cut(s) 305, 470
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 2 cut(s) 305, 470
TspDTI ATGAA 4 cut(s) 243, 278, 381, 569
TspRI CASTG 4 cut(s) 96, 150, 532, 616
Van91I CCANNNNNTGG 2 cut(s) 350, 641
VpaK11BI GGWCC 1 cut(s) 215
XagI CCTNNNNNAGG 1 cut(s) 47
XapI RAATTY 2 cut(s) 397, 653
XbaI TCTAGA 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 480
XspI CTAG 2 cut(s) 84, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.