Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8200260.1

Orthogroup ID

OG0000486

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 325

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8200260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 325 bp

accagttgtcccagccaaaccaggcagaggagcaaagccagttgcacctgttgctggaggcaagaagtggtgtgtagcgaaaccaggcgctagtcctcaagctttgcaggcagacattgattacgtttgtggcaagggagtggactgcaagcccattcaatcaggtggagtttgcttctccaatgaccttgccagtcgggcgtcttacctgatgaatgcttactatcaggcaaatggccgccacgacttcaactgcgatttctctggaagcgggcaaatcaccaccgtggaccccagccgtgggaaatgtacatacaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

107

Amino Acids

11.13

Weight (kDa)

9.0

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca	FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica	MD10G1265100.v1.1
prunus_persica	Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis	pycom05g26640 pycom10g22110
rosa_chinensis	RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata	RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora	Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa	Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha	Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana	Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	239, 271
AcoI	YGGCCR	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	4 cut(s)	27, 54, 300, 301
AgsI	TTSAA	2 cut(s)	159, 251
AjnI	CCWGG	2 cut(s)	20, 83
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
AoxI	GGCC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	22, 85
BfaI	CTAG	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	91
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	22, 85
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	22, 85
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	286, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 54, 300, 301
Bse1I	ACTGG	2 cut(s)	39, 193
BseBI	CCWGG	2 cut(s)	22, 85
BseDI	CCNNGG	2 cut(s)	286, 299
BseLI	CCNNNNNNNGG	4 cut(s)	27, 54, 300, 301
BseNI	ACTGG	2 cut(s)	39, 193
BseRI	GAGGAG	1 cut(s)	43
BseYI	CCCAGC	2 cut(s)	11, 294
BshFI	GGCC	1 cut(s)	238
BslI	CCNNNNNNNGG	4 cut(s)	27, 54, 300, 301
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	309
BspACI	CCGC	2 cut(s)	239, 271
BspANI	GGCC	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	39, 193
BssECI	CCNNGG	2 cut(s)	286, 299
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	22, 85
Bst4CI	ACNGT	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	109, 150, 273
BstDSI	CCRYGG	2 cut(s)	286, 299
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 108, 198
BstNI	CCWGG	2 cut(s)	22, 85
BstSCI	CCNGG	2 cut(s)	20, 83
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	2 cut(s)	286, 299
Cac8I	GCNNGC	3 cut(s)	109, 150, 273
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	310
CviJI	RGCY	6 cut(s)	15, 38, 102, 152, 238, 298
CviKI_1	RGCY	6 cut(s)	15, 38, 102, 152, 238, 298
CviQI	GTAC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	20, 83
FaiI	YATR	1 cut(s)	314
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	91
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	239
GsaI	CCCAGC	2 cut(s)	15, 298
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	238
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	100
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	143, 290
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	143, 290
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	45, 107, 148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 108, 198
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	91
MaeII	ACGT	1 cut(s)	124
MnlI	CCTC	3 cut(s)	21, 51, 106
MslI	CAYNNNNRTG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	22, 85
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	2 cut(s)	22, 85
MwoI	GCNNNNNNNGC	3 cut(s)	51, 108, 198
NlaIV	GGNNCC	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	285
PctI	GAATGC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	20, 83
PspFI	CCCAGC	2 cut(s)	11, 294
PspGI	CCWGG	2 cut(s)	20, 83
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	290
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	1 cut(s)	239
Sau96I	GGNCC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	22, 85
SetI	ASST	6 cut(s)	50, 104, 127, 167, 190, 211
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SsiI	CCGC	2 cut(s)	239, 271
SspMI	CTAG	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	20, 83
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	127
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	290
XspI	CTAG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.