Rh5AG104300

Major pollen allergen Ole e 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000486
Physical Location & Seq
Forward (+)
9587510 .. 9587891
382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG104300.1

Sequence Viewer

Length: 183 bp
ATGGCTCAATCAAGTAGTGCTTCATCTCTTTCCATTCTGTTCCTTCTGCTCTTGTTCATCCACTTTCCTGGAGGGCCTATAAAGCTTGTTAGTTGGGATGAGAATAAGACCTGGTGTGCTGCTAAGCCTTCAGCAACTGATTCAGAGCTTCTGCAAACATCCAGTTTGCCTGCAACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

60

Amino Acids

6.42

Weight (kDa)

5.46

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 114
AjnI CCWGG 2 cut(s) 67, 110
AluBI AGCT 2 cut(s) 85, 148
AluI AGCT 2 cut(s) 85, 148
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 69, 112
BisI GCNGC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 69, 112
BmgT120I GGNCC 1 cut(s) 74
BmrFI CCNGG 2 cut(s) 69, 112
BpmI CTGGAG 1 cut(s) 90
Bpu1102I GCTNAGC 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 69, 112
BseGI GGATG 3 cut(s) 57, 103, 158
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 76
BsnI GGCC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 69, 112
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 57, 103, 158
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 2 cut(s) 69, 112
BstSCI CCNGG 2 cut(s) 67, 110
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 3 cut(s) 57, 103, 158
Cac8I GCNNGC 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 110
CviJI RGCY 5 cut(s) 5, 76, 85, 127, 148
CviKI_1 RGCY 5 cut(s) 5, 76, 85, 127, 148
DdeI CTNAG 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 67, 110
FaiI YATR 1 cut(s) 80
FalI AAGNNNNNCTT 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 3 cut(s) 44, 110, 145
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 53, 138
HpyCH4V TGCA 2 cut(s) 154, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 123
LpnPI CCDG 5 cut(s) 54, 81, 97, 124, 175
Lsp1109I GCAGC 1 cut(s) 106
MabI ACCWGGT 1 cut(s) 110
MfeI CAATTG 1 cut(s) 178
MluCI AATT 1 cut(s) 178
MnlI CCTC 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 69, 112
MunI CAATTG 1 cut(s) 178
MvaI CCWGG 2 cut(s) 69, 112
MwoI GCNNNNNNNGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 67, 110
PspGI CCWGG 2 cut(s) 67, 110
PspPI GGNCC 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 137
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 69, 112
SetI ASST 3 cut(s) 87, 113, 150
SexAI ACCWGGT 1 cut(s) 110
SgeI CNNG 8 cut(s) 24, 64, 80, 81, 98, 123, 124, 174
Sse9I AATT 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 67, 110
TasI AATT 1 cut(s) 178
TfiI GAWTC 1 cut(s) 140
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 12, 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.