RLG00000032005

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000486
Physical Location & Seq
Forward (+)
10143355 .. 10145542
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032005

Sequence Viewer

Length: 996 bp
ATGCGCCTCTCAATGGTGTTCATCGCCCTCCAATTCTATGCTGCCATGGCCAAGTCTATTTCCCTCTGCACACTTGCAGCCTCTCTGCTCTTTCTCCTTCATGCCAATGCTGCTTCTCCAGGAGATGGTCATACTCCATCCACTGAGGAGATTGCCAAGACCTGGTGTGTCCCCAATCCATCATTAACCTATACGAAGCTGCAAGACTTGGAAACGTATGCTTGCAATTATGTGGATTGCTCTTCAATTCACAGTGGGGGTCCATGCTTCAACCCCTCAAACACCTTTAGTCATGCAGCCTTTGCCATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATCACTGATCCAAGCTATGGGAACTGCTACTTTGCAGGTAGAAAAGAGACGGTTTCCTCTTCAGCAGCTCTGAGTACATGGTGTGTTGCAAAGCCGACTGCCACTGACAATCTTCTACAATTGAACATTGACTTCGCTTGTAGCCATGTCAAATGTAGTGTTATTGAACCCGGTGGTGAATGCCAATTACCGGTACCAGACGCTATAATGAACCACGCATCGGTTGCCATGAATCTTTACTACCAATCTTTTGGCAGAACAGATATGAGCTGTTATTTTCAGTCTACTGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTCTATGAAGGGGTTTTCCCTGACCGCGAACCTGTGACTCCTGTCCCTGCAAATCTCAATATAAAGAAAGGGAAGAGTCGTAGGGCCTTTTCTGCAACATCAATTGGACTTATGGTGGTGGGGTCGATCATTGTTTGTGCGCTGGTGGCAGTGGCTATATATGTTATGCTCTGGCTTCGTCAGCCCAGCCCGCCAGTGGATGTACAGCCAGTGGTAAAGGAAGTTCGCATGGACCCATTGCCACAGCCATTGTATCAACCACCAGAGCCATCAGCTCCCCCAGCTCCTGTTGAGGGTTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

332

Amino Acids

35.74

Weight (kDa)

5.45

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 54 - 112 1e-14 X8 domain
X8 PF07983 147 - 219 1.2e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 556
AccB7I CCANNNNNTGG 4 cut(s) 125, 162, 380, 680
AccI GTMKAC 1 cut(s) 647
AccII CGCG 1 cut(s) 717
AciI CCGC 2 cut(s) 715, 881
AclWI GGATC 2 cut(s) 365, 665
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 3 cut(s) 439, 558, 894
AfiI CCNNNNNNNGG 9 cut(s) 13, 125, 162, 380, 553, 583, 680, 886, 983
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 5 cut(s) 246, 271, 487, 530, 668
AjnI CCWGG 2 cut(s) 118, 161
AluBI AGCT 6 cut(s) 199, 378, 431, 633, 965, 974
AluI AGCT 6 cut(s) 199, 378, 431, 633, 965, 974
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 2 cut(s) 365, 665
AlwNI CAGNNNCTG 1 cut(s) 977
AoxI GGCC 2 cut(s) 48, 774
ApeKI GCWGC 6 cut(s) 41, 77, 110, 199, 296, 428
AsiGI ACCGGT 1 cut(s) 553
Asp718I GGTACC 1 cut(s) 556
AspLEI GCGC 2 cut(s) 6, 832
AspS9I GGNCC 3 cut(s) 260, 774, 922
AsuC2I CCSGG 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 551
AvaII GGWCC 2 cut(s) 260, 922
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 556
BbvI GCAGC 6 cut(s) 28, 89, 97, 186, 308, 440
BccI CCATC 4 cut(s) 119, 145, 187, 967
BciT130I CCWGG 2 cut(s) 120, 163
BcnI CCSGG 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 6 cut(s) 42, 78, 111, 200, 297, 429
BlsI GCNGC 6 cut(s) 43, 79, 112, 201, 298, 430
Bme1390I CCNGG 3 cut(s) 120, 163, 534
Bme18I GGWCC 2 cut(s) 260, 922
BmgT120I GGNCC 3 cut(s) 260, 774, 922
BmiI GGNNCC 3 cut(s) 261, 558, 924
BmrFI CCNGG 3 cut(s) 120, 163, 534
BmsI GCATC 1 cut(s) 590
BoxI GACNNNNGTC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 9 cut(s) 13, 125, 162, 380, 553, 583, 680, 886, 983
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 4 cut(s) 334, 655, 884, 899
Bse3DI GCAATG 1 cut(s) 926
BseBI CCWGG 2 cut(s) 120, 163
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 137, 895
BseLI CCNNNNNNNGG 9 cut(s) 13, 125, 162, 380, 553, 583, 680, 886, 983
BseMI GCAATG 1 cut(s) 926
BseMII CTCAG 2 cut(s) 135, 425
BseNI ACTGG 4 cut(s) 334, 655, 884, 899
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 6 cut(s) 28, 89, 97, 186, 308, 440
BseYI CCCAGC 2 cut(s) 875, 970
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 717
BshFI GGCC 2 cut(s) 50, 776
BshNI GGYRCC 1 cut(s) 556
BshTI ACCGGT 1 cut(s) 553
BsiSI CCGG 2 cut(s) 534, 554
BslFI GGGAC 2 cut(s) 155, 719
BslI CCNNNNNNNGG 9 cut(s) 13, 125, 162, 380, 553, 583, 680, 886, 983
BsmAI GTCTC 1 cut(s) 404
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 155, 719
BsmI GAATGC 2 cut(s) 316, 548
BsnI GGCC 2 cut(s) 50, 776
Bsp1407I TGTACA 1 cut(s) 892
Bsp143I GATC 3 cut(s) 370, 670, 816
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 715, 881
BspANI GGCC 2 cut(s) 50, 776
BspCNI CTCAG 2 cut(s) 136, 426
BspFNI CGCG 1 cut(s) 717
BspLI GGNNCC 3 cut(s) 261, 558, 924
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 2 cut(s) 365, 665
BspQI GCTCTTC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 926
BsrFI RCCGGY 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 892
BsrI ACTGG 4 cut(s) 334, 655, 884, 899
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 370, 670, 816
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 120, 163
Bst4CI ACNGT 2 cut(s) 254, 415
Bst6I CTCTTC 3 cut(s) 247, 427, 758
BstAPI GCANNNNNTGC 2 cut(s) 302, 587
BstAUI TGTACA 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 223, 881
BstDEI CTNAG 2 cut(s) 144, 434
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 137, 895
BstFNI CGCG 1 cut(s) 717
BstHHI GCGC 2 cut(s) 6, 832
BstKTI GATC 3 cut(s) 373, 673, 819
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 3 cut(s) 370, 670, 816
BstNI CCWGG 2 cut(s) 120, 163
BstPAI GACNNNNGTC 1 cut(s) 731
BstSCI CCNGG 3 cut(s) 118, 161, 532
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 6 cut(s) 28, 89, 97, 186, 308, 440
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 2 cut(s) 341, 614
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 2 cut(s) 50, 776
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 137, 895
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 8 cut(s) 141, 259, 341, 366, 465, 846, 891, 906
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 223, 881
CaiI CAGNNNCTG 1 cut(s) 977
CfoI GCGC 2 cut(s) 6, 832
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 3 cut(s) 260, 774, 922
CseI GACGC 1 cut(s) 572
CsiI ACCWGGT 1 cut(s) 161
Csp6I GTAC 3 cut(s) 438, 557, 893
CspAI ACCGGT 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 921, 956
CviQI GTAC 3 cut(s) 438, 557, 893
DdeI CTNAG 2 cut(s) 144, 434
DpnI GATC 3 cut(s) 372, 672, 818
DpnII GATC 3 cut(s) 370, 670, 816
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 247, 427, 758
EarI CTCTTC 3 cut(s) 247, 427, 758
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 260, 922
Eco57I CTGAAG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 118, 161
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 404
FaqI GGGAC 2 cut(s) 155, 719
FauI CCCGC 1 cut(s) 888
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 6 cut(s) 42, 78, 111, 200, 297, 429
FokI GGATG 2 cut(s) 124, 902
Fsp4HI GCNGC 6 cut(s) 42, 78, 111, 200, 297, 429
GlaI GCGC 2 cut(s) 5, 831
GluI GCNGC 6 cut(s) 42, 78, 111, 200, 297, 429
GsaI CCCAGC 2 cut(s) 879, 974
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 2 cut(s) 50, 776
HapII CCGG 2 cut(s) 534, 554
HgaI GACGC 1 cut(s) 572
HhaI GCGC 2 cut(s) 6, 832
Hin6I GCGC 2 cut(s) 4, 830
HinP1I GCGC 2 cut(s) 4, 830
HinfI GANTC 4 cut(s) 354, 595, 727, 766
HpaII CCGG 2 cut(s) 534, 554
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 1 cut(s) 648
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 3 cut(s) 323, 351, 681
Hpy8I GTNNAC 1 cut(s) 648
HpyAV CCTTC 2 cut(s) 107, 692
HpyCH4III ACNGT 2 cut(s) 254, 415
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 9 cut(s) 69, 77, 202, 225, 296, 398, 452, 740, 785
HpyF3I CTNAG 2 cut(s) 144, 434
HpySE526I ACGT 1 cut(s) 215
HspAI GCGC 2 cut(s) 4, 830
KpnI GGTACC 1 cut(s) 560
Kzo9I GATC 3 cut(s) 370, 670, 816
LguI GCTCTTC 1 cut(s) 247
LmnI GCTCC 3 cut(s) 325, 970, 979
Lsp1109I GCAGC 6 cut(s) 28, 89, 97, 186, 308, 440
LweI GCATC 1 cut(s) 590
MabI ACCWGGT 1 cut(s) 161
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 344, 724
MalI GATC 3 cut(s) 372, 672, 818
MboI GATC 3 cut(s) 370, 670, 816
MboII GAAGA 5 cut(s) 234, 414, 467, 680, 775
MfeI CAATTG 2 cut(s) 482, 792
MflI RGATCY 1 cut(s) 670
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 6 cut(s) 32, 226, 246, 482, 548, 792
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 3 cut(s) 348, 721, 775
MnlI CCTC 8 cut(s) 17, 38, 74, 91, 139, 286, 430, 976
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 2 cut(s) 105, 659
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 2 cut(s) 534, 554
MspR9I CCNGG 3 cut(s) 120, 163, 534
MunI CAATTG 2 cut(s) 482, 792
Mva1269I GAATGC 2 cut(s) 316, 548
MvaI CCWGG 2 cut(s) 120, 163
MvnI CGCG 1 cut(s) 717
NciI CCSGG 1 cut(s) 534
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 370, 670, 816
NlaIV GGNNCC 3 cut(s) 261, 558, 924
NmuCI GTSAC 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 247
PctI GAATGC 2 cut(s) 316, 548
PfeI GAWTC 1 cut(s) 595
PflMI CCANNNNNTGG 4 cut(s) 125, 162, 380, 680
PfoI TCCNGGA 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 553
PkrI GCNGC 6 cut(s) 43, 79, 112, 201, 298, 430
PleI GAGTC 3 cut(s) 348, 721, 774
PpsI GAGTC 3 cut(s) 348, 721, 774
PshAI GACNNNNGTC 1 cut(s) 731
Psp6I CCWGG 2 cut(s) 118, 161
PspFI CCCAGC 2 cut(s) 875, 970
PspGI CCWGG 2 cut(s) 118, 161
PspN4I GGNNCC 3 cut(s) 261, 558, 924
PspPI GGNCC 3 cut(s) 260, 774, 922
PsrI GAACNNNNNNTAC 2 cut(s) 897, 929
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 3 cut(s) 439, 558, 894
RsaNI GTAC 3 cut(s) 438, 557, 893
RseI CAYNNNNRTG 2 cut(s) 105, 659
SapI GCTCTTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 6 cut(s) 42, 78, 111, 200, 297, 429
Sau3AI GATC 3 cut(s) 370, 670, 816
Sau96I GGNCC 3 cut(s) 260, 774, 922
SchI GAGTC 3 cut(s) 348, 721, 775
ScrFI CCNGG 3 cut(s) 120, 163, 534
SexAI ACCWGGT 1 cut(s) 161
SfaNI GCATC 1 cut(s) 590
SinI GGWCC 2 cut(s) 260, 922
SmiMI CAYNNNNRTG 2 cut(s) 105, 659
Sse9I AATT 6 cut(s) 32, 226, 246, 482, 548, 792
SsiI CCGC 2 cut(s) 715, 881
StyD4I CCNGG 3 cut(s) 118, 161, 532
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 254, 415
TaiI ACGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 815
TasI AATT 6 cut(s) 32, 226, 246, 482, 548, 792
TatI WGTACW 2 cut(s) 437, 892
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 8 cut(s) 148, 259, 341, 373, 472, 846, 891, 906
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 6 cut(s) 41, 77, 110, 199, 296, 428
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 6 cut(s) 10, 89, 323, 587, 608, 711
TspRI CASTG 8 cut(s) 148, 259, 341, 373, 472, 846, 891, 906
Van91I CCANNNNNTGG 4 cut(s) 125, 162, 380, 680
VpaK11BI GGWCC 2 cut(s) 260, 922
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.