RLG00000032013

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000486
Physical Location & Seq
Forward (+)
10233663 .. 10235089
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032013

Sequence Viewer

Length: 843 bp
ATGAATGCTTACGACCAACAGGAACATGATTGCACATTTAGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTGACAGTGTACTACAAATGAACATTGACTTCGCTTGTAGTCAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCACAACAGATTTGAGCTGTCATTTCAAGTCGACCGGCATGATTGTCATTGACGATCCAAGTTTTGAAACTTGTTTGTACAAAAGAAAAGGGAAGGAAGGAGGTGCTGGAGTGGGTCTCGTAAAAAAGCATGGGAAATCTAGTGTCATTTTAAAACTGATAGTTGCGTCGATAATTATTTTTGGGTTGGTAGGGACTGTAACTGTTGTGTGCGTGTGCCGGCGTTCTCGGAATCCCTCACAAGCAATAAAAAGTGAGATGCAACACATGCCAACCCCAGCCCCCTCTCAGTCCCAGCCACAGCCATCATGTTCAGTGACAGTATCAGTTCCCTGTGAGTTGGTATCAGTTCCTCTCAGTCCCCCTCCCGGTCCTTCTCAAACACAACCCAAGAAAGACGACCGCCAACTTGACATTGTTATTTCAGGTAATCAAGTCCATGGAAACAAAGGAGACCATAATGGACAGTTCTCCGTTGGCAACACTATACACAAGACTGTCCATATATCAGCATTTAGTGATGTTAAAACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

281

Amino Acids

29.98

Weight (kDa)

7.07

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 46 - 116 1.1e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 210, 338
AccII CGCG 1 cut(s) 272
AciI CCGC 1 cut(s) 709
AclWI GGATC 2 cut(s) 62, 356
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 2 cut(s) 174, 386
AfiI CCNNNNNNNGG 2 cut(s) 77, 674
AflIII ACRYGT 1 cut(s) 270
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 3 cut(s) 227, 334, 374
AluBI AGCT 3 cut(s) 75, 128, 324
AluI AGCT 3 cut(s) 75, 128, 324
Alw26I GTCTC 2 cut(s) 428, 753
AlwI GGATC 2 cut(s) 62, 356
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 89
AsiGI ACCGGT 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 677
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 677
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 619
BcnI CCSGG 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 428, 753
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 1 cut(s) 677
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BpmI CTGGAG 2 cut(s) 105, 435
BpuMI CCSGG 1 cut(s) 675
BsaI GGTCTC 2 cut(s) 428, 753
BsaJI CCNNGG 1 cut(s) 745
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 674
Bse118I RCCGGY 3 cut(s) 230, 341, 525
BseDI CCNNGG 1 cut(s) 745
BseLI CCNNNNNNNGG 2 cut(s) 77, 674
BseMII CTCAG 3 cut(s) 122, 608, 676
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 2 cut(s) 583, 600
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 2 cut(s) 342, 709
BshTI ACCGGT 1 cut(s) 230
BsiEI CGRYCG 2 cut(s) 342, 709
BsiSI CCGG 4 cut(s) 231, 342, 526, 675
BslFI GGGAC 3 cut(s) 514, 583, 651
BslI CCNNNNNNNGG 2 cut(s) 77, 674
BsmAI GTCTC 2 cut(s) 428, 753
BsmFI GGGAC 3 cut(s) 514, 583, 651
BsmI GAATGC 2 cut(s) 10, 245
Bso31I GGTCTC 2 cut(s) 428, 753
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 2 cut(s) 67, 361
Bsp19I CCATGG 1 cut(s) 745
BspACI CCGC 1 cut(s) 709
BspCNI CTCAG 3 cut(s) 123, 607, 675
BspFNI CGCG 1 cut(s) 272
BspPI GGATC 2 cut(s) 62, 356
BspTNI GGTCTC 2 cut(s) 428, 753
BsrFI RCCGGY 3 cut(s) 230, 341, 525
BsrGI TGTACA 1 cut(s) 384
BssAI RCCGGY 3 cut(s) 230, 341, 525
BssECI CCNNGG 1 cut(s) 745
BssMI GATC 2 cut(s) 67, 361
BssT1I CCWWGG 1 cut(s) 745
Bst4CI ACNGT 7 cut(s) 170, 215, 505, 511, 628, 774, 805
BstAPI GCANNNNNTGC 1 cut(s) 574
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 131, 594, 662
BstDSI CCRYGG 1 cut(s) 745
BstFNI CGCG 1 cut(s) 272
BstKTI GATC 2 cut(s) 70, 364
BstMAI GTCTC 2 cut(s) 428, 753
BstMBI GATC 2 cut(s) 67, 361
BstMCI CGRYCG 2 cut(s) 342, 709
BstMWI GCNNNNNNNGC 3 cut(s) 125, 278, 574
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 214
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 175, 627
Cac8I GCNNGC 1 cut(s) 527
Cfr10I RCCGGY 3 cut(s) 230, 341, 525
Cfr13I GGNCC 1 cut(s) 677
CseI GACGC 2 cut(s) 261, 462
Csp6I GTAC 2 cut(s) 173, 385
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 7 cut(s) 26, 283, 346, 437, 574, 615, 746
CviJI RGCY 8 cut(s) 45, 75, 128, 154, 324, 587, 604, 610
CviKI_1 RGCY 8 cut(s) 45, 75, 128, 154, 324, 587, 604, 610
CviQI GTAC 2 cut(s) 173, 385
DdeI CTNAG 3 cut(s) 131, 594, 662
DpnI GATC 2 cut(s) 69, 363
DpnII GATC 2 cut(s) 67, 361
DraI TTTAAA 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 745
Eco31I GGTCTC 2 cut(s) 428, 753
Eco47I GGWCC 1 cut(s) 677
EcoT14I CCWWGG 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 7 cut(s) 29, 286, 349, 440, 577, 618, 749
FaqI GGGAC 3 cut(s) 514, 583, 651
FatI CATG 7 cut(s) 25, 282, 345, 436, 573, 614, 745
FblI GTMKAC 2 cut(s) 210, 338
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 447
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 2 cut(s) 587, 604
GsuI CTGGAG 2 cut(s) 105, 435
HapII CCGG 4 cut(s) 231, 342, 526, 675
HgaI GACGC 2 cut(s) 261, 462
Hin1II CATG 7 cut(s) 29, 286, 349, 440, 577, 618, 749
HincII GTYRAC 2 cut(s) 211, 339
HindII GTYRAC 2 cut(s) 211, 339
HinfI GANTC 3 cut(s) 51, 286, 538
HpaII CCGG 4 cut(s) 231, 342, 526, 675
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 3 cut(s) 173, 211, 339
Hpy188I TCNGA 3 cut(s) 103, 132, 537
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 3 cut(s) 173, 211, 339
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 394, 398, 690
HpyCH4III ACNGT 7 cut(s) 170, 215, 505, 511, 628, 774, 805
HpyCH4V TGCA 4 cut(s) 33, 87, 149, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 278, 574
HpyF3I CTNAG 3 cut(s) 131, 594, 662
Hsp92II CATG 7 cut(s) 29, 286, 349, 440, 577, 618, 749
KroI GCCGGC 1 cut(s) 525
KroNI GCCGGC 1 cut(s) 527
Kzo9I GATC 2 cut(s) 67, 361
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 555
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 505, 622
MalI GATC 2 cut(s) 69, 363
MboI GATC 2 cut(s) 67, 361
MboII GAAGA 1 cut(s) 116
MluCI AATT 4 cut(s) 89, 222, 245, 480
MluI ACGCGT 1 cut(s) 270
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 5 cut(s) 401, 553, 601, 669, 681
MroNI GCCGGC 1 cut(s) 525
MseI TTAA 2 cut(s) 458, 831
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 4 cut(s) 231, 342, 526, 675
MspR9I CCNGG 1 cut(s) 675
Mva1269I GAATGC 2 cut(s) 10, 245
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 125, 278, 574
NaeI GCCGGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 675
NcoI CCATGG 1 cut(s) 745
NdeII GATC 2 cut(s) 67, 361
NgoMIV GCCGGC 1 cut(s) 525
NlaIII CATG 7 cut(s) 29, 286, 349, 440, 577, 618, 749
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 2 cut(s) 10, 245
PdiI GCCGGC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 286, 538
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspFI CCCAGC 2 cut(s) 583, 600
PspPI GGNCC 1 cut(s) 677
RsaI GTAC 2 cut(s) 174, 386
RsaNI GTAC 2 cut(s) 173, 385
RseI CAYNNNNRTG 1 cut(s) 260
SalI GTCGAC 2 cut(s) 209, 337
SaqAI TTAA 2 cut(s) 458, 831
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 67, 361
Sau96I GGNCC 1 cut(s) 677
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 675
SetI ASST 6 cut(s) 77, 100, 130, 326, 412, 736
SfaNI GCATC 1 cut(s) 555
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 4 cut(s) 89, 222, 245, 480
SsiI CCGC 1 cut(s) 709
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 7 cut(s) 170, 215, 505, 511, 628, 774, 805
TaqI TCGA 3 cut(s) 210, 338, 476
TasI AATT 4 cut(s) 89, 222, 245, 480
TatI WGTACW 2 cut(s) 172, 384
TfiI GAWTC 2 cut(s) 286, 538
Tru1I TTAA 2 cut(s) 458, 831
Tru9I TTAA 2 cut(s) 458, 831
TscAI CASTG 2 cut(s) 175, 627
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 4 cut(s) 17, 197, 278, 299
TspGWI ACGGA 2 cut(s) 93, 769
TspRI CASTG 2 cut(s) 175, 627
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 577
XmiI GTMKAC 2 cut(s) 210, 338
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.