Rroxscaffold_1G00063170

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000486
Physical Location & Seq
Reverse (-)
85116609 .. 85119315
2707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063170.1

Sequence Viewer

Length: 594 bp
ATGGAAGCTAGCAGAGCGGCGTATGTGAAGACATGGTGCATTGCAAAGCCTTCAACGAGTAAAGAATCACTGGAGAACAATCTACAATATGCCTGCAATAACATAAATGCAATGGATTGCAAGGCAATTCAAGAAGGAGGTCCCTGCTCCAAACCTAGTGATCTTTTGCTTTATGCTTCATTTGCCATGAATGCTTACTACCAGGCCAAGGGGAGGCACTACTGGAACTGTGACTTCAGCAACTCTGGTCTCATTTCCTTGACAGATCCAAGTTATGGTAATTGCACATATGAAGGGGGAGAGACAGCGGTGGATGACTCAAATTCGGGCAAGTGGTGTGTAGCAAGCCCTTCAGCAAGTGATGATCAGCTACAAGCATGCATTGAGTTTGCTTGTGGCAAGGTAGATTGTAGCATTATAAGGTCTGGTGGTGCCTGTTTCGAGCCAAACACCGTCAAGAACCGCGCCTCAGTTGCCATGAATCTTTACTATCACCAAACAGGTCAAGCGGATATGAGTTGTGAATTTAATGGCAGTGGTAACATTGTCAGAACCGATCCAAGTTATGGTGATTGCAAACTGAATAGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

197

Amino Acids

21.26

Weight (kDa)

4.86

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 11 - 83 6.8e-18 X8 domain
X8 PF07983 111 - 180 1.8e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 431
AccB7I CCANNNNNTGG 2 cut(s) 275, 566
AccBSI CCGCTC 1 cut(s) 17
AccII CGCG 1 cut(s) 465
AciI CCGC 4 cut(s) 17, 308, 463, 509
AclWI GGATC 2 cut(s) 260, 551
AcsI RAATTY 2 cut(s) 322, 524
AcuI CTGAAG 2 cut(s) 220, 336
AfiI CCNNNNNNNGG 4 cut(s) 208, 213, 275, 566
AgsI TTSAA 2 cut(s) 54, 131
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 8, 370
AluI AGCT 2 cut(s) 8, 370
Alw26I GTCTC 2 cut(s) 254, 296
AlwI GGATC 2 cut(s) 260, 551
AoxI GGCC 1 cut(s) 204
ApoI RAATTY 2 cut(s) 322, 524
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 485, 581
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 254, 296
BfaI CTAG 2 cut(s) 9, 156
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 2 cut(s) 142, 433
BmrFI CCNGG 1 cut(s) 203
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 213, 275, 566
Bse1I ACTGG 2 cut(s) 75, 227
Bse3DI GCAATG 2 cut(s) 39, 117
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 4 cut(s) 208, 213, 275, 566
BseMI GCAATG 2 cut(s) 39, 117
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 2 cut(s) 75, 227
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 431
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 4 cut(s) 208, 213, 275, 566
BsmAI GTCTC 2 cut(s) 254, 296
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 206
Bso31I GGTCTC 1 cut(s) 254
Bsp143I GATC 4 cut(s) 160, 265, 364, 556
BspACI CCGC 4 cut(s) 17, 308, 463, 509
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 482
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 142, 433
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 2 cut(s) 260, 551
BspT107I GGYRCC 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 2 cut(s) 39, 117
BsrI ACTGG 2 cut(s) 75, 227
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 4 cut(s) 160, 265, 364, 556
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 230, 454
BstC8I GCNNGC 4 cut(s) 10, 94, 346, 379
BstDEI CTNAG 1 cut(s) 469
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 465
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 163, 268, 367, 559
BstMAI GTCTC 2 cut(s) 254, 296
BstMBI GATC 4 cut(s) 160, 265, 364, 556
BstMWI GCNNNNNNNGC 4 cut(s) 14, 182, 191, 473
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 465
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 68, 541
Cac8I GCNNGC 4 cut(s) 10, 94, 346, 379
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 140
CviAII CATG 4 cut(s) 33, 187, 378, 478
CviJI RGCY 7 cut(s) 8, 49, 206, 348, 370, 445, 591
CviKI_1 RGCY 7 cut(s) 8, 49, 206, 348, 370, 445, 591
DdeI CTNAG 1 cut(s) 469
DpnI GATC 4 cut(s) 162, 267, 366, 558
DpnII GATC 4 cut(s) 160, 265, 364, 556
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 220, 336
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 4 cut(s) 36, 190, 381, 481
FaqI GGGAC 1 cut(s) 126
FatI CATG 4 cut(s) 32, 186, 377, 477
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 9, 156
GlaI GCGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 206
HhaI GCGC 1 cut(s) 467
Hin1II CATG 4 cut(s) 36, 190, 381, 481
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 3 cut(s) 65, 317, 481
HphI GGTGA 2 cut(s) 485, 581
Hpy188I TCNGA 1 cut(s) 551
Hpy188III TCNNGA 2 cut(s) 131, 457
HpyAV CCTTC 4 cut(s) 60, 128, 287, 360
HpyCH4III ACNGT 2 cut(s) 230, 454
HpyCH4V TGCA 8 cut(s) 39, 44, 96, 110, 120, 285, 381, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 182, 191, 473
HpyF3I CTNAG 1 cut(s) 469
Hsp92II CATG 4 cut(s) 36, 190, 381, 481
HspAI GCGC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 4 cut(s) 160, 265, 364, 556
LmnI GCTCC 1 cut(s) 152
MaeI CTAG 2 cut(s) 9, 156
MaeIII GTNAC 2 cut(s) 230, 539
MalI GATC 4 cut(s) 162, 267, 366, 558
MbiI CCGCTC 1 cut(s) 17
MboI GATC 4 cut(s) 160, 265, 364, 556
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 265
MluCI AATT 4 cut(s) 126, 280, 322, 524
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 3 cut(s) 131, 207, 478
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 4 cut(s) 14, 182, 191, 473
NdeI CATATG 1 cut(s) 289
NdeII GATC 4 cut(s) 160, 265, 364, 556
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 4 cut(s) 36, 190, 381, 481
NlaIV GGNNCC 2 cut(s) 142, 433
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 1 cut(s) 381
PaeI GCATGC 1 cut(s) 381
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 65, 481
PflMI CCANNNNNTGG 2 cut(s) 275, 566
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 140
PsiI TTATAA 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 142, 433
PspPI GGNCC 1 cut(s) 140
PspPPI RGGWCCY 1 cut(s) 140
PsuI RGATCY 1 cut(s) 265
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 4 cut(s) 160, 265, 364, 556
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 203
SetI ASST 7 cut(s) 10, 142, 157, 372, 405, 425, 505
SinI GGWCC 1 cut(s) 140
SphI GCATGC 1 cut(s) 381
Sse9I AATT 4 cut(s) 126, 280, 322, 524
SsiI CCGC 4 cut(s) 17, 308, 463, 509
SspMI CTAG 2 cut(s) 9, 156
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 230, 454
TaqI TCGA 1 cut(s) 441
TasI AATT 4 cut(s) 126, 280, 322, 524
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 2 cut(s) 65, 481
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 2 cut(s) 75, 541
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 4 cut(s) 168, 203, 306, 494
TspRI CASTG 2 cut(s) 75, 541
Van91I CCANNNNNTGG 2 cut(s) 275, 566
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 2 cut(s) 322, 524
XceI RCATGY 1 cut(s) 381
XspI CTAG 2 cut(s) 9, 156
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.