Rroxscaffold_1G00063190

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000486
Physical Location & Seq
Reverse (-)
85146228 .. 85147183
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063190.1

Sequence Viewer

Length: 261 bp
ATGAATGCTTACGACCAACAGGAACATGATTGCACATTTAGTGGCTCGGACTCAAATCTATTACCGATCCAAAGTAAATGGTGTATTGCAAAGCCAACTGCAATCGACAATTTACTACAAATGAACATTGACTTCGCTTGTAGTCAAGTCGATCGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCGTACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCGAACAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

86

Amino Acids

9.65

Weight (kDa)

4.3

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 26 - 84 1.3e-12 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 212
AclWI GGATC 1 cut(s) 61
AfaI GTAC 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 170
AgsI TTSAA 1 cut(s) 167
AlwI GGATC 1 cut(s) 61
AsiGI ACCGGT 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 154
BshTI ACCGGT 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 171
BsmI GAATGC 2 cut(s) 10, 185
Bsp143I GATC 2 cut(s) 66, 151
BspFNI CGCG 1 cut(s) 212
BspPI GGATC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 66, 151
Bst4CI ACNGT 1 cut(s) 192
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 2 cut(s) 69, 154
BstMBI GATC 2 cut(s) 66, 151
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstUI CGCG 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 170
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 193
CspAI ACCGGT 1 cut(s) 170
CviAII CATG 2 cut(s) 26, 223
CviJI RGCY 2 cut(s) 45, 94
CviKI_1 RGCY 2 cut(s) 45, 94
CviQI GTAC 1 cut(s) 193
DpnI GATC 2 cut(s) 68, 153
DpnII GATC 2 cut(s) 66, 151
FaeI CATG 2 cut(s) 29, 226
FaiI YATR 3 cut(s) 27, 200, 224
FatI CATG 2 cut(s) 25, 222
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 29, 226
HinfI GANTC 2 cut(s) 50, 226
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 33, 89, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 29, 226
Kzo9I GATC 2 cut(s) 66, 151
LpnPI CCDG 2 cut(s) 5, 184
MalI GATC 2 cut(s) 68, 153
MboI GATC 2 cut(s) 66, 151
MluCI AATT 3 cut(s) 109, 162, 185
MluI ACGCGT 1 cut(s) 210
MlyI GAGTC 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 1 cut(s) 171
Mva1269I GAATGC 2 cut(s) 10, 185
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 2 cut(s) 66, 151
NlaIII CATG 2 cut(s) 29, 226
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 2 cut(s) 10, 185
PfeI GAWTC 1 cut(s) 226
PinAI ACCGGT 1 cut(s) 170
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 200
Sau3AI GATC 2 cut(s) 66, 151
SchI GAGTC 1 cut(s) 44
SgeI CNNG 9 cut(s) 32, 38, 58, 150, 158, 183, 221, 223, 235
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 3 cut(s) 109, 162, 185
TaaI ACNGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 105, 150
TasI AATT 3 cut(s) 109, 162, 185
TfiI GAWTC 1 cut(s) 226
TspDTI ATGAA 4 cut(s) 17, 137, 218, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.