pycom10g22110

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000486
Physical Location & Seq
Reverse (-)
24584415 .. 24586267
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g22110.4

Sequence Viewer

Length: 645 bp
ATGGCTGAGTTAGCTCTACCGTCTCCTATTATTTCTATCCTTCTTCTGTTCGTCTTCTCAGGAGAGATTTCAATGGTGGTGAATGCACAGAATGCTTGGTGTGTAGCAAATCCTGCAGCACAAGAAGAAGCCCTACATTCAGCAGTGGATTATGCATGCAGTTATGTAGACTGCAGCCCAACAGTGAAAGGAGGCTCTTGCTTTTATCCGGATACATCAGTGCAACATGCCTCATACGCCATGAATGCTTACTACCAAAAGATGGGAAGAAAGCAATGGAATTGCTATTTTACCAACACTGGTCTCATTTCCTTGACTGATCCAAGTTATTGTGCCAGCTGCATATTTGTGAGCGGAGGATCAGGACCTCCACTGCCACAGAAAAAGGATACTTGGTGTGTGGCTAAGCCAGGAATCCCAGATTCTGCGTTGCAGGAAATCATTGACTTCGCTTGTGGAGTATTGAAAGATTGCAGCAAGATACAAGAACATGGTTCATGTTTTTTGCCAAATACACTGATAAGCCATGCCTCATTTGCCATGAATCTTTACTATAAGGCCGACGCACAATACAATTGCGACTTCAACGGTGCTGGCCAAGTCGTCGTGACGAATCCAAGTTTGGGTGATTGCGTCTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

215

Amino Acids

23.08

Weight (kDa)

4.85

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AccBSI CCGCTC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 1 cut(s) 354
AclWI GGATC 2 cut(s) 314, 367
AcoI YGGCCR 1 cut(s) 595
AfiI CCNNNNNNNGG 2 cut(s) 262, 623
AgsI TTSAA 3 cut(s) 72, 466, 586
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AluBI AGCT 2 cut(s) 14, 339
AluI AGCT 2 cut(s) 14, 339
Alw26I GTCTC 2 cut(s) 27, 308
AlwI GGATC 2 cut(s) 314, 367
AlwNI CAGNNNCTG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 2 cut(s) 558, 595
ApeKI GCWGC 4 cut(s) 116, 174, 339, 474
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 91, 638
AvaII GGWCC 1 cut(s) 365
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 1 cut(s) 597
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 4 cut(s) 128, 186, 326, 486
BccI CCATC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 2 cut(s) 205, 382
BcoDI GTCTC 2 cut(s) 27, 308
BfmI CTRYAG 2 cut(s) 114, 172
BfuI GTATCC 2 cut(s) 205, 382
BisI GCNGC 4 cut(s) 117, 175, 340, 475
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 4 cut(s) 118, 176, 341, 476
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 46
Bpu1102I GCTNAGC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 623
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 281
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 262, 623
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 4 cut(s) 128, 186, 326, 486
BshFI GGCC 2 cut(s) 560, 597
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 262, 623
BsmAI GTCTC 2 cut(s) 27, 308
BsmBI CGTCTC 1 cut(s) 27
BsmI GAATGC 3 cut(s) 88, 97, 250
BsnI GGCC 2 cut(s) 560, 597
Bso31I GGTCTC 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 2 cut(s) 319, 359
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 1 cut(s) 354
BspANI GGCC 2 cut(s) 560, 597
BspCNI CTCAG 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 208
BspMAI CTGCAG 2 cut(s) 118, 176
BspPI GGATC 2 cut(s) 314, 367
BspTNI GGTCTC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 304
BssMI GATC 2 cut(s) 319, 359
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 21, 184, 590
BstAPI GCANNNNNTGC 2 cut(s) 92, 113
BstC8I GCNNGC 3 cut(s) 157, 337, 595
BstDEI CTNAG 3 cut(s) 6, 58, 405
BstKTI GATC 2 cut(s) 322, 362
BstMAI GTCTC 2 cut(s) 27, 308
BstMBI GATC 2 cut(s) 319, 359
BstMWI GCNNNNNNNGC 6 cut(s) 11, 92, 113, 236, 245, 536
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 2 cut(s) 159, 230
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 2 cut(s) 114, 172
BstV1I GCAGC 4 cut(s) 128, 186, 326, 486
BstV2I GAAGAC 1 cut(s) 46
BsuI GTATCC 2 cut(s) 205, 382
BsuRI GGCC 2 cut(s) 560, 597
BtsI GCAGTG 2 cut(s) 150, 371
BtsIMutI CAGTG 6 cut(s) 150, 189, 225, 297, 371, 515
Cac8I GCNNGC 3 cut(s) 157, 337, 595
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 2 cut(s) 572, 622
CviAII CATG 7 cut(s) 156, 227, 241, 491, 498, 527, 541
DdeI CTNAG 3 cut(s) 6, 58, 405
DpnI GATC 2 cut(s) 321, 361
DpnII GATC 2 cut(s) 319, 359
EaeI YGGCCR 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 7 cut(s) 159, 230, 244, 494, 501, 530, 544
FatI CATG 7 cut(s) 155, 226, 240, 490, 497, 526, 540
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 4 cut(s) 117, 175, 340, 475
Fsp4HI GCNGC 4 cut(s) 117, 175, 340, 475
GluI GCNGC 4 cut(s) 117, 175, 340, 475
HaeIII GGCC 2 cut(s) 560, 597
HapII CCGG 1 cut(s) 209
HgaI GACGC 2 cut(s) 572, 622
Hin1II CATG 7 cut(s) 159, 230, 244, 494, 501, 530, 544
HinfI GANTC 4 cut(s) 414, 422, 544, 613
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 91, 638
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 644
Hpy188III TCNNGA 4 cut(s) 60, 209, 363, 607
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 2 cut(s) 566, 608
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 3 cut(s) 21, 184, 590
HpyCH4V TGCA 9 cut(s) 86, 116, 155, 159, 174, 223, 342, 433, 474
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 92, 113, 236, 245, 536
HpyF3I CTNAG 3 cut(s) 6, 58, 405
Hsp92II CATG 7 cut(s) 159, 230, 244, 494, 501, 530, 544
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 319, 359
Lsp1109I GCAGC 4 cut(s) 128, 186, 326, 486
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 321, 361
MbiI CCGCTC 1 cut(s) 354
MboI GATC 2 cut(s) 319, 359
MboII GAAGA 4 cut(s) 35, 46, 137, 279
MfeI CAATTG 1 cut(s) 574
MlsI TGGCCA 1 cut(s) 597
MluCI AATT 2 cut(s) 280, 574
MluNI TGGCCA 1 cut(s) 597
MnlI CCTC 5 cut(s) 185, 241, 350, 378, 541
Mox20I TGGCCA 1 cut(s) 597
Mph1103I ATGCAT 1 cut(s) 157
MroI TCCGGA 1 cut(s) 208
MscI TGGCCA 1 cut(s) 597
MslI CAYNNNNRTG 1 cut(s) 347
Msp20I TGGCCA 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 411
MunI CAATTG 1 cut(s) 574
Mva1269I GAATGC 3 cut(s) 88, 97, 250
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 6 cut(s) 11, 92, 113, 236, 245, 536
NdeII GATC 2 cut(s) 319, 359
NlaIII CATG 7 cut(s) 159, 230, 244, 494, 501, 530, 544
NmuCI GTSAC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 2 cut(s) 159, 230
PaeI GCATGC 1 cut(s) 159
PctI GAATGC 3 cut(s) 88, 97, 250
PfeI GAWTC 4 cut(s) 414, 422, 544, 613
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 4 cut(s) 118, 176, 341, 476
PpuMI RGGWCCY 1 cut(s) 365
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspPI GGNCC 1 cut(s) 365
PspPPI RGGWCCY 1 cut(s) 365
PstI CTGCAG 2 cut(s) 118, 176
PstNI CAGNNNCTG 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 347
SatI GCNGC 4 cut(s) 117, 175, 340, 475
Sau3AI GATC 2 cut(s) 319, 359
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 411
SetI ASST 3 cut(s) 16, 341, 370
SfcI CTRYAG 2 cut(s) 114, 172
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 347
SphI GCATGC 1 cut(s) 159
Sse9I AATT 2 cut(s) 280, 574
SsiI CCGC 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 3 cut(s) 21, 184, 590
TasI AATT 2 cut(s) 280, 574
TfiI GAWTC 4 cut(s) 414, 422, 544, 613
TscAI CASTG 6 cut(s) 150, 189, 225, 304, 378, 522
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 4 cut(s) 116, 174, 339, 474
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 257, 486, 557
TspRI CASTG 6 cut(s) 150, 189, 225, 304, 378, 522
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 365
XceI RCATGY 2 cut(s) 159, 230
XmiI GTMKAC 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.