Rh5DG099200

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000486
Physical Location & Seq
Forward (+)
9100911 .. 9117152
16242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG099200.1

Sequence Viewer

Length: 1221 bp
ATGAATGCTTACTACCAACAGGGACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGGAAACTACAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTTACAGTTTACTACAAATGAACATTGACTTCGCTTGTAGTCAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCAGAACAGATTTGAGCTATCATTTCAAGTCGACCGACATGATTGTGATTGACGATCCAAGTTTTGGAACTTGTTTGTACAAAAGAAAAGGGAAGGAAGGAGGTGCTGGGACTGTAACTGTTGTGTGCGTGTGCCAGCGTTCTCGGAATCCCTCACAAGCAATAAAAAGTGAGATGCAACACATGCCAACCCCAGCCCCCTCTCAATCCCAGCCACAGCCATCATGTTCAGTGACGGTATCAGTTCCCTGTCAGACGGTATCAGTTCCTCTCAGTCCCCCTCCCGGTCCTTCTCAAACACAACCCAAGAAAGACAACGGCCAACTTGACATTGTTATTTCAGGTAATCAAGTCAATGGAAACAAAGGAGACCATAATGGACAGTTCTCCGTTGGCAACACTATACACAAGACTGTCCATATCAGCATTGATAGAATTAATGTTTTCCTGCTCCATCCACGAAAAGTTCGCGAAGTTTCCTCTTCAGCAGCTCTGAATACATTGTGTGTGGCAAAGCCGACTGCCACTGACAATTTGCTACAATTGAACATTGACTTCGCTTGTAGTCATGTCAACTGTAGTGTCATTGAACCCGATGGTGAATGCCAATTACAAGACACTATGATGAACCATGCATCTGTAGCCATGAATCTCTTCTACCAATCTTCTGGCAGAACAGATTCGAGTTGTTATTTCAACTCGACTGGCATGAATGTGATTAAAGATCCAAATTATGAAGTTTTAGCTCAACAGCTCCGGCAGTACTGGAACACCCCCAATTGTTTCCCAGACTTCTCCAACCTTAATTTTCCAGGCAACGTTGTGGGTCGACTTACGCCGTGTCATGATGACCGCTCCGCCGGTTCTCGCCACTCCCGGTTTTTTATACATCTCTACCTCTCTCCCCTCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

406

Amino Acids

44.4

Weight (kDa)

6.65

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 46 - 112 5.2e-15 X8 domain
X8 PF07983 271 - 339 5.9e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 1161
AccI GTMKAC 3 cut(s) 210, 338, 1135
AccII CGCG 2 cut(s) 272, 777
AciI CCGC 2 cut(s) 1159, 1164
AclI AACGTT 1 cut(s) 1125
AclWI GGATC 3 cut(s) 62, 356, 1025
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 386, 1070
AfiI CCNNNNNNNGG 3 cut(s) 77, 371, 590
AflIII ACRYGT 1 cut(s) 270
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 5 cut(s) 227, 334, 853, 896, 1003
AjnI CCWGG 1 cut(s) 1117
AluBI AGCT 6 cut(s) 75, 128, 324, 797, 1052, 1060
AluI AGCT 6 cut(s) 75, 128, 324, 797, 1052, 1060
Alw26I GTCTC 1 cut(s) 669
AlwI GGATC 3 cut(s) 62, 356, 1025
AoxI GGCC 1 cut(s) 625
ApeKI GCWGC 2 cut(s) 125, 794
ApoI RAATTY 1 cut(s) 89
AseI ATTAAT 1 cut(s) 744
AsiGI ACCGGT 1 cut(s) 230
Asp700I GAANNNNTTC 2 cut(s) 959, 985
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 2 cut(s) 591, 1183
AsuHPI GGTGA 2 cut(s) 248, 917
AvaII GGWCC 1 cut(s) 593
BbvI GCAGC 2 cut(s) 137, 806
BccI CCATC 3 cut(s) 535, 768, 896
BceAI ACGGC 2 cut(s) 640, 1129
BciT130I CCWGG 1 cut(s) 1119
BcnI CCSGG 2 cut(s) 591, 1183
BcoDI GTCTC 1 cut(s) 669
BfmI CTRYAG 3 cut(s) 214, 883, 945
BisI GCNGC 2 cut(s) 126, 795
BlsI GCNGC 2 cut(s) 127, 796
BmcAI AGTACT 1 cut(s) 1070
Bme1390I CCNGG 3 cut(s) 591, 1119, 1183
Bme18I GGWCC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 593
BmrFI CCNGG 3 cut(s) 591, 1119, 1183
BmsI GCATC 2 cut(s) 471, 950
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 591, 1183
BsaI GGTCTC 1 cut(s) 669
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 371, 590
Bse118I RCCGGY 2 cut(s) 230, 1166
Bse1I ACTGG 2 cut(s) 1015, 1076
BseBI CCWGG 1 cut(s) 1119
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 3 cut(s) 77, 371, 590
BseMII CTCAG 2 cut(s) 122, 592
BseNI ACTGG 2 cut(s) 1015, 1076
BseXI GCAGC 2 cut(s) 137, 806
BseYI CCCAGC 3 cut(s) 413, 499, 516
Bsh1236I CGCG 2 cut(s) 272, 777
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 627
BshTI ACCGGT 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 5 cut(s) 231, 591, 1063, 1167, 1183
BslFI GGGAC 3 cut(s) 36, 430, 567
BslI CCNNNNNNNGG 3 cut(s) 77, 371, 590
BsmAI GTCTC 1 cut(s) 669
BsmFI GGGAC 3 cut(s) 36, 430, 567
BsmI GAATGC 3 cut(s) 10, 245, 914
BsnI GGCC 1 cut(s) 627
Bso31I GGTCTC 1 cut(s) 669
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 3 cut(s) 67, 361, 1030
Bsp68I TCGCGA 1 cut(s) 777
BspACI CCGC 2 cut(s) 1159, 1164
BspANI GGCC 1 cut(s) 627
BspCNI CTCAG 2 cut(s) 123, 591
BspFNI CGCG 2 cut(s) 272, 777
BspHI TCATGA 1 cut(s) 1150
BspPI GGATC 3 cut(s) 62, 356, 1025
BspTNI GGTCTC 1 cut(s) 669
BsrBI CCGCTC 1 cut(s) 1161
BsrFI RCCGGY 2 cut(s) 230, 1166
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 2 cut(s) 1015, 1076
BssAI RCCGGY 2 cut(s) 230, 1166
BssMI GATC 3 cut(s) 67, 361, 1030
Bst2UI CCWGG 1 cut(s) 1119
Bst4CI ACNGT 9 cut(s) 170, 215, 421, 427, 544, 565, 690, 721, 884
Bst6I CTCTTC 2 cut(s) 793, 965
BstAPI GCANNNNNTGC 1 cut(s) 490
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 2 cut(s) 131, 578
BstF5I GGATG 1 cut(s) 760
BstFNI CGCG 2 cut(s) 272, 777
BstKTI GATC 3 cut(s) 70, 364, 1033
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 3 cut(s) 67, 361, 1030
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 4 cut(s) 125, 278, 490, 947
BstNI CCWGG 1 cut(s) 1119
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 3 cut(s) 589, 1117, 1181
BstSFI CTRYAG 3 cut(s) 214, 883, 945
BstUI CGCG 2 cut(s) 272, 777
BstV1I GCAGC 2 cut(s) 137, 806
BstX2I RGATCY 1 cut(s) 1030
BstXI CCANNNNNNTGG 2 cut(s) 305, 974
BstYI RGATCY 1 cut(s) 1030
BsuRI GGCC 1 cut(s) 627
BtsCI GGATG 1 cut(s) 760
BtsIMutI CAGTG 2 cut(s) 543, 831
BtuMI TCGCGA 1 cut(s) 777
Cac8I GCNNGC 1 cut(s) 443
CciI TCATGA 1 cut(s) 1150
Cfr10I RCCGGY 2 cut(s) 230, 1166
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 385, 1069
CspAI ACCGGT 1 cut(s) 230
CviQI GTAC 2 cut(s) 385, 1069
DdeI CTNAG 2 cut(s) 131, 578
DpnI GATC 3 cut(s) 69, 363, 1032
DpnII GATC 3 cut(s) 67, 361, 1030
EaeI YGGCCR 1 cut(s) 625
Eam1104I CTCTTC 2 cut(s) 793, 965
EarI CTCTTC 2 cut(s) 793, 965
EciI GGCGGA 1 cut(s) 1153
Eco31I GGTCTC 1 cut(s) 669
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 1117
EcoT22I ATGCAT 1 cut(s) 943
FaqI GGGAC 3 cut(s) 36, 430, 567
FblI GTMKAC 3 cut(s) 210, 338, 1135
Fnu4HI GCNGC 2 cut(s) 126, 795
FokI GGATG 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 126, 795
GluI GCNGC 2 cut(s) 126, 795
GsaI CCCAGC 3 cut(s) 417, 503, 520
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 627
HapII CCGG 5 cut(s) 231, 591, 1063, 1167, 1183
HgaI GACGC 1 cut(s) 261
HincII GTYRAC 4 cut(s) 211, 339, 880, 1136
HindII GTYRAC 4 cut(s) 211, 339, 880, 1136
HinfI GANTC 5 cut(s) 51, 286, 454, 955, 986
HpaII CCGG 5 cut(s) 231, 591, 1063, 1167, 1183
HphI GGTGA 2 cut(s) 248, 917
Hpy166II GTNNAC 5 cut(s) 173, 211, 339, 880, 1136
Hpy188I TCNGA 5 cut(s) 103, 132, 453, 561, 801
Hpy188III TCNNGA 3 cut(s) 48, 776, 1151
Hpy8I GTNNAC 5 cut(s) 173, 211, 339, 880, 1136
HpyAV CCTTC 3 cut(s) 394, 398, 606
HpyCH4III ACNGT 9 cut(s) 170, 215, 421, 427, 544, 565, 690, 721, 884
HpyCH4IV ACGT 1 cut(s) 1125
HpyCH4V TGCA 4 cut(s) 33, 149, 484, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 278, 490, 947
HpyF3I CTNAG 2 cut(s) 131, 578
HpySE526I ACGT 1 cut(s) 1125
Kzo9I GATC 3 cut(s) 67, 361, 1030
LmnI GCTCC 4 cut(s) 124, 762, 1065, 1166
Lsp1109I GCAGC 2 cut(s) 137, 806
LweI GCATC 2 cut(s) 471, 950
MaeII ACGT 1 cut(s) 1125
MaeIII GTNAC 2 cut(s) 421, 538
MalI GATC 3 cut(s) 69, 363, 1032
MbiI CCGCTC 1 cut(s) 1161
MboI GATC 3 cut(s) 67, 361, 1030
MboII GAAGA 4 cut(s) 116, 780, 952, 963
MfeI CAATTG 2 cut(s) 848, 1084
MflI RGATCY 1 cut(s) 1030
MluI ACGCGT 1 cut(s) 270
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 1128
MnlI CCTC 7 cut(s) 401, 469, 517, 585, 597, 796, 1214
Mph1103I ATGCAT 1 cut(s) 943
MroXI GAANNNNTTC 2 cut(s) 959, 985
MseI TTAA 3 cut(s) 744, 1026, 1110
MslI CAYNNNNRTG 4 cut(s) 260, 350, 929, 1019
MspI CCGG 5 cut(s) 231, 591, 1063, 1167, 1183
MspR9I CCNGG 3 cut(s) 591, 1119, 1183
MunI CAATTG 2 cut(s) 848, 1084
Mva1269I GAATGC 3 cut(s) 10, 245, 914
MvaI CCWGG 1 cut(s) 1119
MvnI CGCG 2 cut(s) 272, 777
MwoI GCNNNNNNNGC 4 cut(s) 125, 278, 490, 947
NciI CCSGG 2 cut(s) 591, 1183
NdeII GATC 3 cut(s) 67, 361, 1030
NmuCI GTSAC 1 cut(s) 538
NruI TCGCGA 1 cut(s) 777
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 1 cut(s) 493
PagI TCATGA 1 cut(s) 1150
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 3 cut(s) 10, 245, 914
PdmI GAANNNNTTC 2 cut(s) 959, 985
PfeI GAWTC 4 cut(s) 286, 454, 955, 986
PflMI CCANNNNNTGG 1 cut(s) 371
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 2 cut(s) 127, 796
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PshBI ATTAAT 1 cut(s) 744
Psp1406I AACGTT 1 cut(s) 1125
Psp6I CCWGG 1 cut(s) 1117
PspFI CCCAGC 3 cut(s) 413, 499, 516
PspGI CCWGG 1 cut(s) 1117
PspPI GGNCC 1 cut(s) 593
PsuI RGATCY 1 cut(s) 1030
RruI TCGCGA 1 cut(s) 777
RsaI GTAC 2 cut(s) 386, 1070
RsaNI GTAC 2 cut(s) 385, 1069
RseI CAYNNNNRTG 4 cut(s) 260, 350, 929, 1019
SalI GTCGAC 3 cut(s) 209, 337, 1134
SaqAI TTAA 3 cut(s) 744, 1026, 1110
SatI GCNGC 2 cut(s) 126, 795
Sau3AI GATC 3 cut(s) 67, 361, 1030
Sau96I GGNCC 1 cut(s) 593
ScaI AGTACT 1 cut(s) 1070
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 3 cut(s) 591, 1119, 1183
SfaNI GCATC 2 cut(s) 471, 950
SfcI CTRYAG 3 cut(s) 214, 883, 945
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 4 cut(s) 260, 350, 929, 1019
SsiI CCGC 2 cut(s) 1159, 1164
StyD4I CCNGG 3 cut(s) 589, 1117, 1181
TaaI ACNGT 9 cut(s) 170, 215, 421, 427, 544, 565, 690, 721, 884
TaiI ACGT 1 cut(s) 1128
TaqI TCGA 5 cut(s) 210, 338, 989, 1007, 1135
TaqII GACCGA 1 cut(s) 356
TatI WGTACW 2 cut(s) 384, 1068
TfiI GAWTC 4 cut(s) 286, 454, 955, 986
Tru1I TTAA 3 cut(s) 744, 1026, 1110
Tru9I TTAA 3 cut(s) 744, 1026, 1110
TscAI CASTG 2 cut(s) 543, 838
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 2 cut(s) 125, 794
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 8 cut(s) 17, 197, 278, 299, 947, 968, 1031, 1056
TspGWI ACGGA 2 cut(s) 93, 685
TspRI CASTG 2 cut(s) 543, 838
Van91I CCANNNNNTGG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 593
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 493
XmiI GTMKAC 3 cut(s) 210, 338, 1135
XmnI GAANNNNTTC 2 cut(s) 959, 985
ZrmI AGTACT 1 cut(s) 1070
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.