AT5G63225

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000486
Physical Location & Seq
Reverse (-)
25356133 .. 25356767
635 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63225.1

Sequence Viewer

Length: 333 bp
ATGTCATCGCAGCTTTTAACGCTCTTTCTTCTTCTATCTGCTGTTGCGATCCCTGTCGTGACTAGCAGACAATGGTGCATGGCCATGCCGAATGCCACAGGAGAACAATTACAAGCTAATATTGATTATGCTTGTAGCCAGAATGTTGATTGTACACCGATCCAACCAGGTGGAACTTGCTATGAACCTAACACGTTATTAGACCATGCGTCGTTTGCCATGAACGCATATTATCAAAGCCATGGTCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGGTTGTTTTGTTTTCATCGACCCAAGTAATGGTTCATGTATCTACTACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

4.69

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 24 - 94 6.8e-25 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 308
AclWI GGATC 2 cut(s) 43, 154
AcoI YGGCCR 2 cut(s) 81, 271
AfaI GTAC 2 cut(s) 154, 277
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 192
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 2 cut(s) 13, 116
AluI AGCT 2 cut(s) 13, 116
AlwI GGATC 2 cut(s) 43, 154
AoxI GGCC 2 cut(s) 81, 271
ApeKI GCWGC 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
BalI TGGCCA 1 cut(s) 83
BbvI GCAGC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 168
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 168
BmeRI GACNNNNNGTC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 283
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 83, 273
BsiEI CGRYCG 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 308
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 2 cut(s) 83, 273
Bsp1407I TGTACA 1 cut(s) 152
Bsp143I GATC 2 cut(s) 48, 159
Bsp19I CCATGG 1 cut(s) 241
BspANI GGCC 2 cut(s) 83, 273
BspPI GGATC 2 cut(s) 43, 154
BsrGI TGTACA 1 cut(s) 152
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 48, 159
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 168
BstAUI TGTACA 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 241
BstKTI GATC 2 cut(s) 51, 162
BstMBI GATC 2 cut(s) 48, 159
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 19, 215, 224
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 170
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 83, 273
BtgI CCRYGG 1 cut(s) 241
CseI GACGC 1 cut(s) 198
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 2 cut(s) 153, 276
CviAII CATG 6 cut(s) 79, 85, 206, 220, 242, 315
CviJI RGCY 6 cut(s) 13, 83, 116, 138, 240, 273
CviKI_1 RGCY 6 cut(s) 13, 83, 116, 138, 240, 273
CviQI GTAC 2 cut(s) 153, 276
DpnI GATC 2 cut(s) 50, 161
DpnII GATC 2 cut(s) 48, 159
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 2 cut(s) 81, 271
EagI CGGCCG 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 208
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 6 cut(s) 82, 88, 209, 223, 245, 318
FaiI YATR 9 cut(s) 80, 86, 129, 183, 207, 221, 229, 243, 316
FatI CATG 6 cut(s) 78, 84, 205, 219, 241, 314
Fnu4HI GCNGC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 11
HaeIII GGCC 2 cut(s) 83, 273
HgaI GACGC 1 cut(s) 198
Hin1II CATG 6 cut(s) 82, 88, 209, 223, 245, 318
Hpy166II GTNNAC 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 215, 224
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 6 cut(s) 82, 88, 209, 223, 245, 318
Kzo9I GATC 2 cut(s) 48, 159
LpnPI CCDG 6 cut(s) 66, 84, 152, 153, 180, 264
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 247
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 50, 161
MboI GATC 2 cut(s) 48, 159
MboII GAAGA 3 cut(s) 20, 23, 266
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 187
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 2 cut(s) 17, 331
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 19, 215, 224
NcoI CCATGG 1 cut(s) 241
NdeII GATC 2 cut(s) 48, 159
NlaIII CATG 6 cut(s) 82, 88, 209, 223, 245, 318
NmuCI GTSAC 1 cut(s) 58
PctI GAATGC 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
RsaI GTAC 2 cut(s) 154, 277
RsaNI GTAC 2 cut(s) 153, 276
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 17, 331
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 2 cut(s) 48, 159
ScrFI CCNGG 1 cut(s) 168
SetI ASST 6 cut(s) 15, 118, 172, 190, 197, 269
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 1 cut(s) 107
SspI AATATT 1 cut(s) 121
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 241
TaiI ACGT 1 cut(s) 197
TaqI TCGA 2 cut(s) 252, 297
TasI AATT 1 cut(s) 107
TatI WGTACW 1 cut(s) 152
Tru1I TTAA 2 cut(s) 17, 331
Tru9I TTAA 2 cut(s) 17, 331
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 4 cut(s) 198, 236, 283, 303
Van91I CCANNNNNTGG 1 cut(s) 308
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.