RchiOBHm_Chr5g0013381

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000486
Physical Location & Seq
Forward (+)
9045851 .. 9046914
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29392

Sequence Viewer

Length: 447 bp
ATGAATTTGAAATTAAATCTTGCAGGAGATAGTCATACTCTGTCCACGGCAGACACTGCAGAGACTTGGTGTGTCCCCAATCCATCGTTGACCTATAAGAATCTGCAAGAGATAGAAACCTTTGCTTGCAATTATGTGGATTGCTCTTCAATTCACAGTGGGGGTCCATGCTTCAACCCCTTGAACGCCTTCATTCATGCAGCCTTTGCCATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATTACTGATCCAAGCTATGGGAACTGTCATTTTGCAGGTAGAGAAGAGAAGGTTTCCTCTTCAGCAGCTCTGAATACATGGTGTGTGGCAAAGCCGACTGCCACTGACAATTTGCTACAATTGAACATTGACTTCGCTTGTAGTCATGTCAACTGTAGTGTCATTGAACCCCGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

148

Amino Acids

16.21

Weight (kDa)

5.12

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 22 - 80 5.8e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 284
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 6 cut(s) 10, 150, 175, 184, 391, 434
AluBI AGCT 2 cut(s) 282, 335
AluI AGCT 2 cut(s) 282, 335
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 200, 332
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 439
AvaII GGWCC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 212, 344
BccI CCATC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 56
BfmI CTRYAG 2 cut(s) 57, 421
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 2 cut(s) 201, 333
BlsI GCNGC 2 cut(s) 202, 334
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 439
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 2 cut(s) 45, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 45, 437
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 212, 344
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 45, 437
BssMI GATC 1 cut(s) 274
Bst4CI ACNGT 3 cut(s) 158, 293, 422
Bst6I CTCTTC 3 cut(s) 151, 306, 331
BstAPI GCANNNNNTGC 2 cut(s) 56, 206
BstC8I GCNNGC 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 45
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 56, 206, 215
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 2 cut(s) 57, 421
BstV1I GCAGC 2 cut(s) 212, 344
BstXI CCANNNNNNTGG 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 4 cut(s) 54, 163, 245, 369
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 164
CviAII CATG 5 cut(s) 168, 197, 211, 345, 413
CviJI RGCY 4 cut(s) 203, 282, 335, 361
CviKI_1 RGCY 4 cut(s) 203, 282, 335, 361
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 151, 306, 331
EarI CTCTTC 3 cut(s) 151, 306, 331
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 312
FaeI CATG 5 cut(s) 171, 200, 214, 348, 416
FaqI GGGAC 1 cut(s) 59
FatI CATG 5 cut(s) 167, 196, 210, 344, 412
Fnu4HI GCNGC 2 cut(s) 201, 333
Fsp4HI GCNGC 2 cut(s) 201, 333
GluI GCNGC 2 cut(s) 201, 333
HapII CCGG 1 cut(s) 439
Hin1II CATG 5 cut(s) 171, 200, 214, 348, 416
HincII GTYRAC 2 cut(s) 90, 418
HindII GTYRAC 2 cut(s) 90, 418
HinfI GANTC 2 cut(s) 100, 258
HpaII CCGG 1 cut(s) 439
Hpy166II GTNNAC 3 cut(s) 45, 90, 418
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 2 cut(s) 227, 255
Hpy8I GTNNAC 3 cut(s) 45, 90, 418
HpyAV CCTTC 2 cut(s) 199, 310
HpyCH4III ACNGT 3 cut(s) 158, 293, 422
HpyCH4V TGCA 6 cut(s) 23, 59, 106, 129, 200, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 206, 215
Hsp92II CATG 5 cut(s) 171, 200, 214, 348, 416
Kzo9I GATC 1 cut(s) 274
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 9, 212, 240, 251, 288
Lsp1109I GCAGC 2 cut(s) 212, 344
MaeIII GTNAC 1 cut(s) 248
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 3 cut(s) 138, 318, 323
MfeI CAATTG 1 cut(s) 386
MluCI AATT 6 cut(s) 4, 11, 130, 150, 376, 386
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 1 cut(s) 14
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 3 cut(s) 56, 206, 215
NciI CCSGG 1 cut(s) 439
NdeII GATC 1 cut(s) 274
NlaIII CATG 5 cut(s) 171, 200, 214, 348, 416
NlaIV GGNNCC 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 151
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 2 cut(s) 202, 334
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 201, 333
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 439
SetI ASST 6 cut(s) 95, 122, 284, 307, 321, 337
SfcI CTRYAG 2 cut(s) 57, 421
SinI GGWCC 1 cut(s) 164
Sse9I AATT 6 cut(s) 4, 11, 130, 150, 376, 386
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 3 cut(s) 158, 293, 422
TasI AATT 6 cut(s) 4, 11, 130, 150, 376, 386
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 4 cut(s) 61, 163, 245, 376
TseI GCWGC 2 cut(s) 200, 332
TspDTI ATGAA 4 cut(s) 17, 181, 185, 227
TspRI CASTG 4 cut(s) 61, 163, 245, 376
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.