RchiOBHm_Chr5g0013321

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000486
Physical Location & Seq
Forward (+)
9011140 .. 9012570
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29386

Sequence Viewer

Length: 660 bp
ATGGTCATTGTGTTGTTGCTGTCCGTTTTGCGACATATTCATATTTCACCTTTGAAGGCATTTGCACAGACTTGGTGTGTAGCCAATCCATCATTAGGTTATGATACTTCGGAAAACGTGGAAAGCTATGCATGCAATTACGTGGATTGCTCTTCAATTCACAGCGGAGATCCATGCTCTGTCCCCTCGAACTTGTTTAGTCGTGCATCCTTTGCCATGAATGCTTACTACCAACAGGGACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAGCTGCCCCTTACAGTTTACTACAAATAAACATTGACTTCGCTTGTAGTAAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCAGAACAGATTTGAGCTGTCATTTCAAGTCGACCGGCATGATTGTGATTGACGATCCAAGTAAGTATAATCGTTATCTGGTGGTTTTGGAACTTGTTTGTACAAAAGAAAAGGGAAGGAAGGAGGTGCTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

219

Amino Acids

23.96

Weight (kDa)

6.04

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 24 - 89 2e-12 X8 domain
X8 PF07983 118 - 188 6.1e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 426, 554
AccII CGCG 1 cut(s) 488
AciI CCGC 1 cut(s) 165
AclWI GGATC 3 cut(s) 164, 278, 572
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 2 cut(s) 95, 293
AflIII ACRYGT 1 cut(s) 486
AgeI ACCGGT 1 cut(s) 446
AgsI TTSAA 4 cut(s) 55, 156, 443, 550
AluBI AGCT 5 cut(s) 126, 291, 344, 374, 540
AluI AGCT 5 cut(s) 126, 291, 344, 374, 540
AlwI GGATC 3 cut(s) 164, 278, 572
ApeKI GCWGC 2 cut(s) 341, 374
ApoI RAATTY 1 cut(s) 305
AsiGI ACCGGT 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 39, 464
BbvI GCAGC 2 cut(s) 353, 361
BccI CCATC 1 cut(s) 97
BfmI CTRYAG 1 cut(s) 430
BisI GCNGC 2 cut(s) 342, 375
BlsI GCNGC 2 cut(s) 343, 376
BmsI GCATC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 446
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 293
Bse118I RCCGGY 2 cut(s) 446, 557
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 95, 293
BseMII CTCAG 1 cut(s) 338
BseXI GCAGC 2 cut(s) 353, 361
Bsh1236I CGCG 1 cut(s) 488
Bsh1285I CGRYCG 1 cut(s) 558
BshTI ACCGGT 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 558
BsiSI CCGG 2 cut(s) 447, 558
BslFI GGGAC 2 cut(s) 167, 252
BslI CCNNNNNNNGG 2 cut(s) 95, 293
BsmFI GGGAC 2 cut(s) 167, 252
BsmI GAATGC 2 cut(s) 226, 461
Bsp1407I TGTACA 1 cut(s) 623
Bsp143I GATC 3 cut(s) 169, 283, 577
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 1 cut(s) 488
BspPI GGATC 3 cut(s) 164, 278, 572
BspQI GCTCTTC 1 cut(s) 157
BsrFI RCCGGY 2 cut(s) 446, 557
BsrGI TGTACA 1 cut(s) 623
BssAI RCCGGY 2 cut(s) 446, 557
BssMI GATC 3 cut(s) 169, 283, 577
Bst4CI ACNGT 2 cut(s) 386, 431
Bst6I CTCTTC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 133, 372
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 488
BstKTI GATC 3 cut(s) 172, 286, 580
BstMBI GATC 3 cut(s) 169, 283, 577
BstMCI CGRYCG 1 cut(s) 558
BstMWI GCNNNNNNNGC 6 cut(s) 132, 212, 221, 341, 371, 494
BstNSI RCATGY 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 353, 361
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 521
BstYI RGATCY 1 cut(s) 169
BtsCI GGATG 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 133, 372
Cfr10I RCCGGY 2 cut(s) 446, 557
CseI GACGC 1 cut(s) 477
Csp6I GTAC 1 cut(s) 624
CspAI ACCGGT 1 cut(s) 446
CviAII CATG 6 cut(s) 132, 174, 217, 242, 499, 562
CviJI RGCY 8 cut(s) 83, 126, 261, 291, 344, 370, 374, 540
CviKI_1 RGCY 8 cut(s) 83, 126, 261, 291, 344, 370, 374, 540
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 1 cut(s) 347
DpnI GATC 3 cut(s) 171, 285, 579
DpnII GATC 3 cut(s) 169, 283, 577
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 133
FaeI CATG 6 cut(s) 135, 177, 220, 245, 502, 565
FaqI GGGAC 2 cut(s) 167, 252
FatI CATG 6 cut(s) 131, 173, 216, 241, 498, 561
FblI GTMKAC 2 cut(s) 426, 554
Fnu4HI GCNGC 2 cut(s) 342, 375
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 342, 375
GluI GCNGC 2 cut(s) 342, 375
GsuI CTGGAG 1 cut(s) 321
HapII CCGG 2 cut(s) 447, 558
HgaI GACGC 1 cut(s) 477
Hin1II CATG 6 cut(s) 135, 177, 220, 245, 502, 565
HincII GTYRAC 2 cut(s) 427, 555
HindII GTYRAC 2 cut(s) 427, 555
HinfI GANTC 2 cut(s) 267, 502
HpaII CCGG 2 cut(s) 447, 558
HphI GGTGA 2 cut(s) 39, 464
Hpy166II GTNNAC 3 cut(s) 389, 427, 555
Hpy188I TCNGA 3 cut(s) 112, 319, 348
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 3 cut(s) 389, 427, 555
HpyAV CCTTC 3 cut(s) 49, 633, 637
HpyCH4III ACNGT 2 cut(s) 386, 431
HpyCH4IV ACGT 2 cut(s) 117, 141
HpyCH4V TGCA 7 cut(s) 65, 131, 135, 206, 249, 303, 365
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 212, 221, 341, 371, 494
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 117, 141
Hsp92II CATG 6 cut(s) 135, 177, 220, 245, 502, 565
Kzo9I GATC 3 cut(s) 169, 283, 577
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 9 cut(s) 221, 249, 351, 384, 460, 480, 571, 587, 638
Lsp1109I GCAGC 2 cut(s) 353, 361
LweI GCATC 1 cut(s) 215
MaeII ACGT 2 cut(s) 117, 141
MalI GATC 3 cut(s) 171, 285, 579
MboI GATC 3 cut(s) 169, 283, 577
MboII GAAGA 2 cut(s) 144, 332
MflI RGATCY 1 cut(s) 169
MluCI AATT 5 cut(s) 136, 156, 305, 438, 461
MluI ACGCGT 1 cut(s) 486
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 2 cut(s) 196, 640
Mph1103I ATGCAT 1 cut(s) 133
MslI CAYNNNNRTG 2 cut(s) 476, 566
MspA1I CMGCKG 2 cut(s) 165, 374
MspI CCGG 2 cut(s) 447, 558
Mva1269I GAATGC 2 cut(s) 226, 461
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 6 cut(s) 132, 212, 221, 341, 371, 494
NdeII GATC 3 cut(s) 169, 283, 577
NlaIII CATG 6 cut(s) 135, 177, 220, 245, 502, 565
NsiI ATGCAT 1 cut(s) 133
NspI RCATGY 1 cut(s) 135
PaeI GCATGC 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 2 cut(s) 226, 461
PfeI GAWTC 1 cut(s) 502
PinAI ACCGGT 1 cut(s) 446
PkrI GCNGC 2 cut(s) 343, 376
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 142
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 2 cut(s) 476, 566
SalI GTCGAC 2 cut(s) 425, 553
SapI GCTCTTC 1 cut(s) 157
SatI GCNGC 2 cut(s) 342, 375
Sau3AI GATC 3 cut(s) 169, 283, 577
SchI GAGTC 1 cut(s) 261
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 476, 566
SphI GCATGC 1 cut(s) 135
Sse9I AATT 5 cut(s) 136, 156, 305, 438, 461
SsiI CCGC 1 cut(s) 165
TaaI ACNGT 2 cut(s) 386, 431
TaiI ACGT 2 cut(s) 120, 144
TaqI TCGA 3 cut(s) 188, 426, 554
TasI AATT 5 cut(s) 136, 156, 305, 438, 461
TatI WGTACW 1 cut(s) 623
TfiI GAWTC 1 cut(s) 502
TseI GCWGC 2 cut(s) 341, 374
TspDTI ATGAA 4 cut(s) 29, 233, 494, 515
TspGWI ACGGA 2 cut(s) 13, 309
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 135
XmiI GTMKAC 2 cut(s) 426, 554
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.