Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

11540641 .. 11541549

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGGCTCGCCGGAGCTTGCCGGAGCTCGCCGGAGGAAGAATCCCGAAGAAGAAGTCGAGCTCGCGCATGGGGCAGTGTGGATAGACCGATTCGGTTTATTTATGCTGCTGATTTTAGAAACCGGTTAGATCCACCGGTTCCTTTAACATATTTTGGGAATTGTGTTTTACCAATTGATTTTAATGGATATGAAGCGACGACCTTTTTGGGAGAAGATGGATTCGTCAACGGTGTTGAGATTTTAAGTGATTCGGTCAAAGGTTTGGGTTCACGAAGTCTTGAGTCAGTTTGGGAGGTGTACGAGGAAGGAACTAAAAACATGAAGGTTGGTACAAAAGTATTGACTGTTACCGGGTCGAACCAGTTTGGGATATATGGGGCGGATTTTGGGTGGGGAAGACCAGTTAATACTGATGTTATGTCTCTTTACAAGAACAATAGCTTTTCTATGTCAGCGAGGAGGGATGAGATTGGGGTCTCTTTGAAGAGATGTGAGATGATTGTTTTCCTTTCTTTATTTAGTAATGGATTTGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

180

Amino Acids

20.11

Weight (kDa)

6.36

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	30 - 158	1.7e-11	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	4, 383
AclWI	GGATC	1 cut(s)	125
AfaI	GTAC	2 cut(s)	302, 334
AgeI	ACCGGT	2 cut(s)	123, 136
AgsI	TTSAA	1 cut(s)	487
AluBI	AGCT	4 cut(s)	17, 27, 62, 444
AluI	AGCT	4 cut(s)	17, 27, 62, 444
Alw21I	GWGCWC	2 cut(s)	29, 64
Alw26I	GTCTC	2 cut(s)	429, 484
AlwI	GGATC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	4 cut(s)	40, 72, 190, 222
AsiGI	ACCGGT	2 cut(s)	123, 136
AspLEI	GCGC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	355
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BanII	GRGCYC	2 cut(s)	29, 64
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	29, 64
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	429, 484
BisI	GCNGC	2 cut(s)	5, 108
BlsI	GCNGC	2 cut(s)	6, 109
Bme1390I	CCNGG	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	484
BsaWI	WCCGGW	2 cut(s)	123, 136
Bse118I	RCCGGY	2 cut(s)	123, 136
Bse1I	ACTGG	2 cut(s)	364, 404
BseGI	GGATG	1 cut(s)	472
BseNI	ACTGG	2 cut(s)	364, 404
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	66
BshTI	ACCGGT	2 cut(s)	123, 136
BsiHKAI	GWGCWC	2 cut(s)	29, 64
BsiSI	CCGG	6 cut(s)	12, 22, 32, 124, 137, 354
BsmAI	GTCTC	2 cut(s)	429, 484
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	29, 64
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	4, 383
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	123, 136
BsrI	ACTGG	2 cut(s)	364, 404
BssAI	RCCGGY	2 cut(s)	123, 136
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	233, 349
Bst6I	CTCTTC	1 cut(s)	482
BstC8I	GCNNGC	4 cut(s)	9, 19, 29, 64
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	429, 484
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	353
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	4 cut(s)	9, 19, 29, 64
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	2 cut(s)	123, 136
Csp6I	GTAC	2 cut(s)	301, 333
CspAI	ACCGGT	2 cut(s)	123, 136
CviAII	CATG	2 cut(s)	69, 322
CviJI	RGCY	5 cut(s)	7, 17, 27, 62, 444
CviKI_1	RGCY	5 cut(s)	7, 17, 27, 62, 444
CviQI	GTAC	2 cut(s)	301, 333
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
EciI	GGCGGA	1 cut(s)	398
Ecl136II	GAGCTC	2 cut(s)	27, 62
Eco24I	GRGCYC	2 cut(s)	29, 64
Eco31I	GGTCTC	1 cut(s)	484
Eco53kI	GAGCTC	2 cut(s)	27, 62
EcoICRI	GAGCTC	2 cut(s)	27, 62
EcoT38I	GRGCYC	2 cut(s)	29, 64
FaeI	CATG	2 cut(s)	72, 325
FaiI	YATR	9 cut(s)	70, 105, 151, 192, 323, 376, 378, 422, 452
FatI	CATG	2 cut(s)	68, 321
Fnu4HI	GCNGC	2 cut(s)	5, 108
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	2 cut(s)	29, 64
Fsp4HI	GCNGC	2 cut(s)	5, 108
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	5, 108
HapII	CCGG	6 cut(s)	12, 22, 32, 124, 137, 354
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	72, 325
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	5 cut(s)	41, 91, 222, 251, 284
HpaII	CCGG	6 cut(s)	12, 22, 32, 124, 137, 354
Hpy166II	GTNNAC	3 cut(s)	229, 272, 301
Hpy188III	TCNNGA	3 cut(s)	45, 273, 281
Hpy8I	GTNNAC	3 cut(s)	229, 272, 301
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	302, 319
HpyCH4III	ACNGT	2 cut(s)	233, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	72, 325
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	14, 24
LpnPI	CCDG	8 cut(s)	25, 35, 45, 137, 150, 367, 377, 417
Lsp1109I	GCAGC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	6 cut(s)	50, 60, 63, 227, 411, 499
MfeI	CAATTG	2 cut(s)	174, 538
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	29, 64
MluCI	AATT	3 cut(s)	160, 174, 538
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	5 cut(s)	28, 289, 298, 453, 456
MseI	TTAA	4 cut(s)	146, 183, 245, 408
MspI	CCGG	6 cut(s)	12, 22, 32, 124, 137, 354
MspR9I	CCNGG	1 cut(s)	355
MunI	CAATTG	2 cut(s)	174, 538
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	72, 325
NlaIV	GGNNCC	1 cut(s)	141
PfeI	GAWTC	4 cut(s)	41, 91, 222, 251
PinAI	ACCGGT	2 cut(s)	123, 136
PkrI	GCNGC	2 cut(s)	6, 109
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp124BI	GAGCTC	2 cut(s)	29, 64
PspN4I	GGNNCC	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	302, 334
RsaNI	GTAC	2 cut(s)	301, 333
SacI	GAGCTC	2 cut(s)	29, 64
SaqAI	TTAA	4 cut(s)	146, 183, 245, 408
SatI	GCNGC	2 cut(s)	5, 108
Sau3AI	GATC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	2 cut(s)	29, 64
SetI	ASST	8 cut(s)	19, 29, 64, 206, 265, 300, 330, 446
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	3 cut(s)	160, 174, 538
SsiI	CCGC	2 cut(s)	4, 383
SstI	GAGCTC	2 cut(s)	29, 64
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	233, 349
TaqI	TCGA	2 cut(s)	58, 359
TaqII	GACCGA	2 cut(s)	103, 244
TasI	AATT	3 cut(s)	160, 174, 538
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	4 cut(s)	41, 91, 222, 251
Tru1I	TTAA	4 cut(s)	146, 183, 245, 408
Tru9I	TTAA	4 cut(s)	146, 183, 245, 408
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	207, 338
TspRI	CASTG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.