Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021275.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

140 .. 865

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggcaaatccaaatccaaatccactgaaagtagttgaggtttgcagagtagctccacaaccggcctcagcctctaagtcacttcctctaaccttctttgatttactttggctgaggtttgaacccttccaacgccttttcttttatgaagcctctaacacagcactcttcttcaaatccatacttccaaggctcaaaacctccctatcactaactcttcaccacttttcacctctcgccggaaacctcacctggcctgaagactcccctaagccaattctcagctatgtcaaaggcaacaccgtttcgctcacaatagccgagtactactctaatgatgatgatgctggtcatgatcatttccatcgtctttcgagcagcgacttccttgaagcaaaagaatactattctcttgtgccccaactggatgtgtctcacgatcgagccacggcgctggcactacaaatcactctctttccgaatcgggggttttcgattggaacagccatgcaccatgcagtccttgatggtaattctttaaccttgtttttcaaattgtgggctcacatatgcaggcatcatgaacaacttgcaacctcctcgtctttgttagcggatgacctaaaaccatgttacactgatagattggtcatcgaggacccattggggctcgaagcaggggcggaactatttgaggttctgaaggggtccagaccccccctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

241

Amino Acids

27.01

Weight (kDa)

5.97

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	614, 683
AcuI	CTGAAG	2 cut(s)	279, 722
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	239, 485
AgsI	TTSAA	4 cut(s)	122, 175, 392, 553
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	2 cut(s)	53, 285
AluI	AGCT	2 cut(s)	53, 285
Alw26I	GTCTC	1 cut(s)	438
AoxI	GGCC	2 cut(s)	63, 254
ApeKI	GCWGC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	658, 708
AsuHPI	GGTGA	3 cut(s)	212, 222, 241
AvaII	GGWCC	2 cut(s)	658, 708
BaeGI	GKGCMC	1 cut(s)	420
BanII	GRGCYC	2 cut(s)	565, 672
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	2 cut(s)	67, 113
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	372, 521
BceAI	ACGGC	1 cut(s)	465
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BciT130I	CCWGG	1 cut(s)	253
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	455
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	658, 708
BmgT120I	GGNCC	2 cut(s)	658, 708
BmiI	GGNNCC	2 cut(s)	660, 709
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	334, 586
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
Bpu10I	CCTNAGC	3 cut(s)	67, 113, 270
BsaJI	CCNNGG	2 cut(s)	188, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 485
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	188, 447
BseGI	GGATG	2 cut(s)	433, 622
BseLI	CCNNNNNNNGG	2 cut(s)	239, 485
BseMII	CTCAG	3 cut(s)	81, 104, 295
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	442
BshFI	GGCC	2 cut(s)	65, 256
BsiEI	CGRYCG	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	62, 240
BslI	CCNNNNNNNGG	2 cut(s)	239, 485
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	65, 256
Bsp1286I	GDGCHC	3 cut(s)	420, 565, 672
Bsp143I	GATC	2 cut(s)	355, 439
BspACI	CCGC	2 cut(s)	614, 683
BspANI	GGCC	2 cut(s)	65, 256
BspCNI	CTCAG	3 cut(s)	80, 105, 294
BspHI	TCATGA	2 cut(s)	352, 580
BspLI	GGNNCC	2 cut(s)	660, 709
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	188, 447
BssMI	GATC	2 cut(s)	355, 439
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	173, 222
BstC8I	GCNNGC	2 cut(s)	456, 575
BstDEI	CTNAG	5 cut(s)	67, 75, 113, 270, 281
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	433, 622
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	2 cut(s)	358, 442
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	2 cut(s)	355, 439
BstMCI	CGRYCG	1 cut(s)	442
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	65, 256
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	433, 622
BtsIMutI	CAGTG	2 cut(s)	23, 636
Cac8I	GCNNGC	2 cut(s)	456, 575
CciI	TCATGA	2 cut(s)	352, 580
CfoI	GCGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	658, 708
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	5 cut(s)	353, 508, 515, 581, 630
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	5 cut(s)	67, 75, 113, 270, 281
DpnI	GATC	2 cut(s)	357, 441
DpnII	GATC	2 cut(s)	355, 439
Eam1104I	CTCTTC	2 cut(s)	173, 222
EarI	CTCTTC	2 cut(s)	173, 222
EciI	GGCGGA	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	188
Eco24I	GRGCYC	2 cut(s)	565, 672
Eco47I	GGWCC	2 cut(s)	658, 708
Eco57I	CTGAAG	2 cut(s)	279, 722
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	565, 672
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	5 cut(s)	356, 511, 518, 584, 633
FatI	CATG	5 cut(s)	352, 507, 514, 580, 629
FauNDI	CATATG	1 cut(s)	569
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	2 cut(s)	440, 629
FriOI	GRGCYC	2 cut(s)	565, 672
Fsp4HI	GCNGC	1 cut(s)	379
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	65, 256
HapII	CCGG	2 cut(s)	62, 240
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	356, 511, 518, 584, 633
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	2 cut(s)	263, 481
HpaII	CCGG	2 cut(s)	62, 240
HphI	GGTGA	3 cut(s)	212, 222, 241
Hpy188I	TCNGA	2 cut(s)	480, 702
Hpy188III	TCNNGA	4 cut(s)	353, 437, 581, 711
HpyAV	CCTTC	3 cut(s)	103, 136, 697
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	5 cut(s)	45, 511, 518, 573, 593
HpyF3I	CTNAG	5 cut(s)	67, 75, 113, 270, 281
Hsp92II	CATG	5 cut(s)	356, 511, 518, 584, 633
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	355, 439
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	334, 586
MaeIII	GTNAC	2 cut(s)	78, 632
MalI	GATC	2 cut(s)	357, 441
MboI	GATC	2 cut(s)	355, 439
MboII	GAAGA	4 cut(s)	160, 163, 209, 272
MhlI	GDGCHC	3 cut(s)	420, 565, 672
MluCI	AATT	3 cut(s)	276, 532, 554
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	154
MseI	TTAA	1 cut(s)	539
MspI	CCGG	2 cut(s)	62, 240
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	569
NdeII	GATC	2 cut(s)	355, 439
NlaIII	CATG	5 cut(s)	356, 511, 518, 584, 633
NlaIV	GGNNCC	2 cut(s)	660, 709
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	78
PagI	TCATGA	2 cut(s)	352, 580
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	380
Ple19I	CGATCG	1 cut(s)	442
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	660, 709
PspPI	GGNCC	2 cut(s)	658, 708
PspPPI	RGGWCCY	1 cut(s)	658
PvuI	CGATCG	1 cut(s)	442
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	2 cut(s)	355, 439
Sau96I	GGNCC	2 cut(s)	658, 708
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	3 cut(s)	420, 565, 672
SfaNI	GCATC	2 cut(s)	334, 586
SinI	GGWCC	2 cut(s)	658, 708
Sse9I	AATT	3 cut(s)	276, 532, 554
SsiI	CCGC	2 cut(s)	614, 683
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	5 cut(s)	374, 442, 494, 654, 672
TasI	AATT	3 cut(s)	276, 532, 554
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	2 cut(s)	30, 643
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	162, 597
TspRI	CASTG	2 cut(s)	30, 643
VpaK11BI	GGWCC	2 cut(s)	658, 708
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.