Rroxscaffold_4G00330590

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000138
Physical Location & Seq
Reverse (-)
64313971 .. 64321752
7782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330590.1

Sequence Viewer

Length: 777 bp
ATGAAAAGTCCAATTCATGAGCTTCCACAAATAACTTGCGCTTACACTCGGGTTTGTTTAGTCAAGGAACAAGAAATAGAAGCCCGCAAAGTTTCAGTTCAAGCCTTTAGCGTGGACTGTAGGTCTCGCTTGGACCCTCCGGTACCTGAAAACTATTTTGGAAACTGCATGATGGGTGTGATGGGGTTTGCGGAAGCAAAGGAGTTATTGGGTGAAGATGGTGAAACTATAAAGGGTTTAGACAAGAATGGGGTTTTGAAAGGGGCCCACGAGGTTTGCTCTTCGAAAATCAAGGACTTGCTTCAGGCTGAGGGGATATATTCACTGCTGGCTGCTGGTTCGCACCAATTTCAGATTTATGATACGAACTTTGGATGGGGTAGGCCGAAGAAAGTTGAGGTGGTTTCCCAAGATAGGACAGGAGCGATTTCGGTCTCAGATTCCAAGAATGGCGGTGGAGGTATTGAGATTGGGATGGTTTTGAAAAAAGATTGTATGGAAGCTTTCGCTTCTCTATTTGCCGAAGGATTTGGCGACTCAATTGGAAAGCACCGAGTCAGGGGAAATGATGGAGAAGCATGGAAATTAATTAAAAAGTCAACCTTAGCATATTTTCTTACTCCGGCTAGGAGAAAGCGAGCTAGACAAGGAATGAGGGTCGACAGCCTGATCAAACGAGCTTCAAATGAGTTGAAGCTTTTCAGATCCATTCTAGACATCCTAAGGATCATTTCTTATGAAGAGTTCAAGAGTTATTTCGGAGTGGAAGACCTTTAA

Protein Analysis

258

Amino Acids

28.65

Weight (kDa)

8.64

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 13 - 171 2.2e-20 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 660
AciI CCGC 3 cut(s) 85, 191, 453
AclWI GGATC 2 cut(s) 699, 734
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 414, 559
AgsI TTSAA 6 cut(s) 101, 259, 484, 684, 694, 748
AhdI GACNNNNNGTC 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 5 cut(s) 22, 503, 641, 680, 697
AluI AGCT 5 cut(s) 22, 503, 641, 680, 697
Alw26I GTCTC 2 cut(s) 129, 439
AlwI GGATC 2 cut(s) 699, 734
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 2 cut(s) 264, 383
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 332
AseI ATTAAT 1 cut(s) 587
Asp700I GAANNNNTTC 1 cut(s) 698
Asp718I GGTACC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 133, 264, 265
AsuHPI GGTGA 2 cut(s) 224, 233
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 133
AxyI CCTNAGG 1 cut(s) 722
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 268
BauI CACGAG 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 319
BccI CCATC 6 cut(s) 166, 175, 212, 369, 469, 563
BclI TGATCA 1 cut(s) 669
BcoDI GTCTC 2 cut(s) 129, 439
BfaI CTAG 3 cut(s) 627, 642, 713
BfmI CTRYAG 1 cut(s) 118
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 133
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 133, 264, 265
BmiI GGNNCC 4 cut(s) 135, 144, 265, 266
BplI GAGNNNNNCTC 2 cut(s) 263, 295
Bpu10I CCTNAGC 2 cut(s) 309, 604
Bpu14I TTCGAA 1 cut(s) 284
BsaI GGTCTC 2 cut(s) 129, 439
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 559
Bse21I CCTNAGG 1 cut(s) 722
BseGI GGATG 3 cut(s) 380, 480, 717
BseLI CCNNNNNNNGG 2 cut(s) 414, 559
BseMII CTCAG 2 cut(s) 300, 450
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 2 cut(s) 266, 385
BshNI GGYRCC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 140, 623
BslI CCNNNNNNNGG 2 cut(s) 414, 559
BsmAI GTCTC 2 cut(s) 129, 439
BsnI GGCC 2 cut(s) 266, 385
Bso31I GGTCTC 2 cut(s) 129, 439
BsoBI CYCGRG 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 284
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 3 cut(s) 669, 704, 726
BspACI CCGC 3 cut(s) 85, 191, 453
BspANI GGCC 2 cut(s) 266, 385
BspCNI CTCAG 2 cut(s) 301, 449
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 4 cut(s) 135, 144, 265, 266
BspPI GGATC 2 cut(s) 699, 734
BspQI GCTCTTC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 142
BspTNI GGTCTC 2 cut(s) 129, 439
BssMI GATC 3 cut(s) 669, 704, 726
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 286, 735
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 85, 330, 639
BstDEI CTNAG 4 cut(s) 309, 436, 604, 722
BstF5I GGATG 3 cut(s) 380, 480, 717
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 3 cut(s) 672, 707, 729
BstMAI GTCTC 2 cut(s) 129, 439
BstMBI GATC 3 cut(s) 669, 704, 726
BstSFI CTRYAG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
Bsu36I CCTNAGG 1 cut(s) 722
BsuRI GGCC 2 cut(s) 266, 385
BtsCI GGATG 3 cut(s) 380, 480, 717
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 3 cut(s) 85, 330, 639
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 3 cut(s) 133, 264, 265
Csp6I GTAC 1 cut(s) 143
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 3 cut(s) 17, 169, 579
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 4 cut(s) 309, 436, 604, 722
DpnI GATC 3 cut(s) 671, 706, 728
DpnII GATC 3 cut(s) 669, 704, 726
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 286, 735
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 2 cut(s) 286, 735
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 2 cut(s) 129, 439
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 268
FaeI CATG 3 cut(s) 20, 172, 582
FaiI YATR 9 cut(s) 18, 170, 230, 319, 360, 497, 580, 610, 738
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FatI CATG 3 cut(s) 16, 168, 578
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 3 cut(s) 387, 487, 704
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 3 cut(s) 627, 642, 713
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 2 cut(s) 266, 385
HapII CCGG 2 cut(s) 140, 623
HhaI GCGC 1 cut(s) 41
Hin1II CATG 3 cut(s) 20, 172, 582
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 2 cut(s) 600, 661
HindII GTYRAC 2 cut(s) 600, 661
HindIII AAGCTT 2 cut(s) 501, 695
HinfI GANTC 3 cut(s) 440, 536, 555
HpaII CCGG 2 cut(s) 140, 623
HphI GGTGA 2 cut(s) 224, 233
Hpy166II GTNNAC 3 cut(s) 115, 600, 661
Hpy188I TCNGA 4 cut(s) 354, 439, 704, 761
Hpy188III TCNNGA 3 cut(s) 17, 713, 748
Hpy8I GTNNAC 3 cut(s) 115, 600, 661
HpyAV CCTTC 1 cut(s) 518
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 4 cut(s) 309, 436, 604, 722
Hsp92II CATG 3 cut(s) 20, 172, 582
HspAI GCGC 1 cut(s) 39
KpnI GGTACC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 3 cut(s) 669, 704, 726
LguI GCTCTTC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 422
LpnPI CCDG 9 cut(s) 153, 159, 290, 314, 321, 405, 544, 636, 680
Lsp1109I GCAGC 1 cut(s) 319
MaeI CTAG 3 cut(s) 627, 642, 713
MalI GATC 3 cut(s) 671, 706, 728
MboI GATC 3 cut(s) 669, 704, 726
MboII GAAGA 4 cut(s) 227, 273, 400, 752
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 1 cut(s) 704
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 5 cut(s) 12, 347, 540, 584, 588
MlyI GAGTC 2 cut(s) 530, 564
MnlI CCTC 6 cut(s) 147, 265, 304, 391, 452, 648
MroXI GAANNNNTTC 1 cut(s) 698
MseI TTAA 3 cut(s) 587, 591, 775
MspI CCGG 2 cut(s) 140, 623
MunI CAATTG 1 cut(s) 540
NdeII GATC 3 cut(s) 669, 704, 726
NlaIII CATG 3 cut(s) 20, 172, 582
NlaIV GGNNCC 4 cut(s) 135, 144, 265, 266
NspV TTCGAA 1 cut(s) 284
PacI TTAATTAA 1 cut(s) 591
PagI TCATGA 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 2 cut(s) 530, 563
PpsI GAGTC 2 cut(s) 530, 563
PshBI ATTAAT 1 cut(s) 587
PspN4I GGNNCC 4 cut(s) 135, 144, 265, 266
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 133, 264, 265
PsuI RGATCY 1 cut(s) 704
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SalI GTCGAC 1 cut(s) 659
SapI GCTCTTC 1 cut(s) 286
SaqAI TTAA 3 cut(s) 587, 591, 775
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 3 cut(s) 669, 704, 726
Sau96I GGNCC 3 cut(s) 133, 264, 265
SchI GAGTC 2 cut(s) 530, 564
SduI GDGCHC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 1 cut(s) 133
Sse9I AATT 5 cut(s) 12, 347, 540, 584, 588
SsiI CCGC 3 cut(s) 85, 191, 453
SspMI CTAG 3 cut(s) 627, 642, 713
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 284, 660
TaqII GACCGA 1 cut(s) 421
TasI AATT 5 cut(s) 12, 347, 540, 584, 588
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 3 cut(s) 587, 591, 775
Tru9I TTAA 3 cut(s) 587, 591, 775
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 5, 17, 753
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 133
VspI ATTAAT 1 cut(s) 587
XbaI TCTAGA 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 3 cut(s) 627, 642, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.