Rh2AG557600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000138
Physical Location & Seq
Forward (+)
78849395 .. 78857468
8074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG557600.1

Sequence Viewer

Length: 351 bp
ATGGACCGTTCCTACAGCCCAGTGATGATTATTGGGCAATGTCAGATTTCTCCACCACCCGGGTCAGTTCCTACTACCTCTTCCCTCGTCCCAATGAAAGCGTCTTCTCCTTCGAGTTCCCTCATCCTCTTCACCATTTCACCCAAACCATCCTCCCGAAGCTCAAACACTCCCTCTCCAACACTTCTTTCCCTTGGTCCTAAATCTCATATGCTCTCCACCAACATCCAAGCCTTATATACACTACGCTGCCGGCGCTTCACTCCCATTGACAATTGCCGAGTCCTCAGATCGGCTACTAGCCTGAAAGAGAAAGTTGATGCATATATTGGCGGCTATCACGCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.5

Weight (kDa)

9.95

Isoelectric Point (pI)

71.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 59, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 4, 197
AsuC2I CCSGG 2 cut(s) 60, 61
AsuHPI GGTGA 2 cut(s) 124, 132
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 2 cut(s) 4, 197
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 157
BcnI CCSGG 2 cut(s) 60, 61
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 13
BfoI RGCGCY 1 cut(s) 259
BisI GCNGC 2 cut(s) 250, 334
BlsI GCNGC 2 cut(s) 251, 335
Bme1390I CCNGG 2 cut(s) 60, 61
Bme18I GGWCC 2 cut(s) 4, 197
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 4, 197
BmrFI CCNGG 2 cut(s) 60, 61
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 60, 61
BsaJI CCNNGG 2 cut(s) 59, 193
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 292
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 59, 193
BseGI GGATG 3 cut(s) 123, 149, 225
BseLI CCNNNNNNNGG 2 cut(s) 59, 292
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 60, 253
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 59, 292
BsmFI GGGAC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 290
BspACI CCGC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 59, 193
BssMI GATC 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 85, 134
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 123, 149, 225
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 58, 59
BstSFI CTRYAG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 96
BtsCI GGATG 3 cut(s) 123, 149, 225
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 4, 197
Cfr9I CCCGGG 1 cut(s) 59
CseI GACGC 1 cut(s) 90
CviJI RGCY 6 cut(s) 18, 162, 233, 296, 303, 336
CviKI_1 RGCY 6 cut(s) 18, 162, 233, 296, 303, 336
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
Eam1104I CTCTTC 2 cut(s) 85, 134
EarI CTCTTC 2 cut(s) 85, 134
Eco130I CCWWGG 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 4, 197
Eco88I CYCGRG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 193
FaiI YATR 7 cut(s) 210, 212, 238, 240, 325, 327, 349
FaqI GGGAC 1 cut(s) 74
FauNDI CATATG 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 250, 334
FokI GGATG 3 cut(s) 110, 136, 212
Fsp4HI GCNGC 2 cut(s) 250, 334
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 250, 334
HaeII RGCGCY 1 cut(s) 259
HapII CCGG 2 cut(s) 60, 253
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 258
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 1 cut(s) 282
HpaII CCGG 2 cut(s) 60, 253
HphI GGTGA 2 cut(s) 124, 132
Hpy188I TCNGA 2 cut(s) 45, 290
Hpy188III TCNNGA 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 287
HspAI GCGC 1 cut(s) 256
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 290
LpnPI CCDG 4 cut(s) 33, 73, 266, 317
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 300
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MboII GAAGA 3 cut(s) 72, 96, 121
MfeI CAATTG 1 cut(s) 274
MluCI AATT 1 cut(s) 274
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 7 cut(s) 88, 95, 131, 137, 163, 184, 296
Mph1103I ATGCAT 1 cut(s) 325
MroNI GCCGGC 1 cut(s) 252
MspI CCGG 2 cut(s) 60, 253
MspR9I CCNGG 2 cut(s) 60, 61
MunI CAATTG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 255
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 2 cut(s) 60, 61
NdeI CATATG 1 cut(s) 210
NdeII GATC 1 cut(s) 290
NgoMIV GCCGGC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 251, 335
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PspPI GGNCC 2 cut(s) 4, 197
SatI GCNGC 2 cut(s) 250, 334
Sau3AI GATC 1 cut(s) 290
Sau96I GGNCC 2 cut(s) 4, 197
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 60, 61
SetI ASST 2 cut(s) 80, 164
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 13
SinI GGWCC 2 cut(s) 4, 197
SmaI CCCGGG 1 cut(s) 61
Sse9I AATT 1 cut(s) 274
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 58, 59
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 113
TasI AATT 1 cut(s) 274
TauI GCSGC 1 cut(s) 336
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 110
TspMI CCCGGG 1 cut(s) 59
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 4, 197
XmaI CCCGGG 1 cut(s) 59
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.