Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

22986774 .. 22987660

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCACCATGCAATCCTTGATGGCAATTCTTTAACCTTGTTTTTCAAATTGTGGGCTCACATATGCAGGCATCATGAACAACTTGCAATCTCCTCATCTTTGTTAGCAGATGACCTAAAACCGTGTTACACTGACAGATTGTTCATCGAGGACCCATTGGGGCTCGAAGCAATCTACTCTAAGCAATGGCTCGACATGGACGGGCCTAACAACCGAAGCTTAAAGTCAAGTTGTGAGAAAGTATTTATATTCCTCAGCGCCGACTACAGGTCTCGCTTAGATCCTCCTATATCTGCAAATTACTTTGGAAATTGCACCGGGGGCTGTGCAGCAGTCGCAGAAACAAAAGGGCTACTAGGAGAAGATGGGTTCGTTGTGGCTTTAAAGGCAATTAGTGAAGCTATTATGGGTTTGAAAAATGAGGGGGTACTTCTCGATGGGGCTGAGAGTTGGGTTTCAAAGTTGTGTACTGTGAGAGGTAGTGATAGGATTTTTTCGACTGCTGGCTCGCCTCAGTTTGGGATTTATGAGACTGATTTTGGATGGGGAAGACCAAAGAGGACTGAGGTGCTTACCATAGATAAGACAGGAGCCATCTCTTTTTCAGATAGCAAGAATGGTGGTGGAGGCGTTGAGGTTGGGCTGGTTTTGGAAGAGCATCTTATGGGAGTTTTTGCTTCTCTATTTGCCAAGGGTTTTCTTCATACACCTCTGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

240

Amino Acids

26.12

Weight (kDa)

5.48

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	75 - 227	3.3e-16	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	275
AfaI	GTAC	2 cut(s)	429, 469
AfiI	CCNNNNNNNGG	2 cut(s)	267, 518
AgsI	TTSAA	3 cut(s)	46, 415, 459
AhdI	GACNNNNNGTC	1 cut(s)	268
AluBI	AGCT	2 cut(s)	219, 401
AluI	AGCT	2 cut(s)	219, 401
Alw26I	GTCTC	2 cut(s)	276, 524
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	329
AseI	ATTAAT	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	151, 203
AsuC2I	CCSGG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	151
BanII	GRGCYC	2 cut(s)	58, 165
BbsI	GAAGAC	1 cut(s)	556
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	5 cut(s)	14, 359, 431, 537, 602
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	276, 524
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	151
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	151, 203
BmiI	GGNNCC	2 cut(s)	153, 592
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	79, 667
BpiI	GAAGAC	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	318, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 518
Bse3DI	GCAATG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	318, 690
BseGI	GGATG	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	267, 518
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	4 cut(s)	268, 435, 527, 555
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	267, 518
BsmAI	GTCTC	2 cut(s)	276, 524
BsnI	GGCC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	58, 165
Bsp143I	GATC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	4 cut(s)	267, 436, 526, 556
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	153, 592
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	318, 690
BssMI	GATC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	690
Bst4CI	ACNGT	2 cut(s)	123, 472
Bst6I	CTCTTC	1 cut(s)	648
BstC8I	GCNNGC	3 cut(s)	68, 505, 509
BstDEI	CTNAG	6 cut(s)	180, 254, 277, 444, 513, 564
BstF5I	GGATG	1 cut(s)	548
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	2 cut(s)	276, 524
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 335, 386
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	548
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	68, 505, 509
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	151, 203
Csp6I	GTAC	2 cut(s)	428, 468
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviAII	CATG	3 cut(s)	8, 74, 196
CviQI	GTAC	2 cut(s)	428, 468
DdeI	CTNAG	6 cut(s)	180, 254, 277, 444, 513, 564
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraI	TTTAAA	1 cut(s)	384
DriI	GACNNNNNGTC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	648
Eam1105I	GACNNNNNGTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	690
Eco24I	GRGCYC	2 cut(s)	58, 165
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	690
EcoT38I	GRGCYC	2 cut(s)	58, 165
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	3 cut(s)	11, 77, 199
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FatI	CATG	3 cut(s)	7, 73, 195
FauNDI	CATATG	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	555
FriOI	GRGCYC	2 cut(s)	58, 165
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	11, 77, 199
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	217
HpaII	CCGG	1 cut(s)	318
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	2 cut(s)	607, 714
Hpy188III	TCNNGA	2 cut(s)	74, 434
Hpy8I	GTNNAC	1 cut(s)	468
HpyCH4III	ACNGT	2 cut(s)	123, 472
HpyCH4V	TGCA	7 cut(s)	4, 11, 66, 86, 296, 315, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 335, 386
HpyF3I	CTNAG	6 cut(s)	180, 254, 277, 444, 513, 564
Hsp92II	CATG	3 cut(s)	11, 77, 199
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	590
LpnPI	CCDG	6 cut(s)	52, 253, 331, 489, 573, 629
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	2 cut(s)	79, 667
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	4 cut(s)	374, 561, 665, 692
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	58, 165
MluCI	AATT	6 cut(s)	25, 47, 298, 310, 390, 718
MseI	TTAA	5 cut(s)	32, 221, 383, 717, 721
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	3 cut(s)	321, 335, 386
NciI	CCSGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	11, 77, 199
NlaIV	GGNNCC	2 cut(s)	153, 592
PacI	TTAATTAA	1 cut(s)	721
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	648
PkrI	GCNGC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	153, 592
PspPI	GGNCC	2 cut(s)	151, 203
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	429, 469
RsaNI	GTAC	2 cut(s)	428, 468
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	5 cut(s)	32, 221, 383, 717, 721
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	2 cut(s)	151, 203
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	58, 165
SetI	ASST	9 cut(s)	38, 117, 221, 272, 403, 481, 570, 639, 712
SfaNI	GCATC	2 cut(s)	79, 667
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	151
Sse9I	AATT	6 cut(s)	25, 47, 298, 310, 390, 718
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	2 cut(s)	123, 472
TaqI	TCGA	5 cut(s)	147, 165, 192, 435, 497
TasI	AATT	6 cut(s)	25, 47, 298, 310, 390, 718
TatI	WGTACW	1 cut(s)	467
Tru1I	TTAA	5 cut(s)	32, 221, 383, 717, 721
Tru9I	TTAA	5 cut(s)	32, 221, 383, 717, 721
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	90, 133, 692
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	717
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.