Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009268.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Forward (+)

28187 .. 28903

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009268.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggccccaacaacagaagccgaaaggtttgggaattcaaagctccaccagatgactcagttagaacttagaagcatctttgagttcacaggcgcgcagatacaaaccctaaggcagatggtactagaaaaggtttctgatccagtacatcttcatttgtcaacgttttctctagcttgtgcttacacttgggtttgtttagtcaaggcacaagaaatagaagccggaaaagtttcagttcaggtcgttagcgtggactgtaggtctcgcttggaccctccggtacctgaaaactattttgggaactgcatgatgggtgtgatggggtttgcggatgcaaaggagttattgggtgaagatgggttggttgcggcggtcacagcaattagtgaaactataaagggtttggacaagaatggggttttgaaaggggcacacgagctttacgtttcgaaaatcaaggacttgtttcaggctgaggggatatatgctactgctggttcgcaccgatttcagatttacgatacgaactttggatggggtaggccaaaaaaagttgaggtggtttctatagatatgaccggagcgatttcagtctccgattccaagaatggtggtggaggtatagagattggggtggttttgaaaaaagattgtatggaagcatttgcttctctatttgctgtaggttttggaaagcaccgagtcaggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

238

Amino Acids

25.85

Weight (kDa)

6.31

Isoelectric Point (pI)

25.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	283
AccII	CGCG	1 cut(s)	95
AciI	CCGC	3 cut(s)	332, 371, 374
AclI	AACGTT	1 cut(s)	164
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	3 cut(s)	123, 147, 285
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgsI	TTSAA	3 cut(s)	39, 427, 646
AhdI	GACNNNNNGTC	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	43, 176, 442
AluI	AGCT	3 cut(s)	43, 176, 442
Alw26I	GTCTC	2 cut(s)	270, 601
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	3, 545
ApoI	RAATTY	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	232
Asp718I	GGTACC	1 cut(s)	283
AspLEI	GCGC	2 cut(s)	95, 97
AspS9I	GGNCC	2 cut(s)	4, 274
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	437
BbvCI	CCTCAGC	1 cut(s)	477
BccI	CCATC	5 cut(s)	112, 307, 316, 353, 531
BcoDI	GTCTC	2 cut(s)	270, 601
BfaI	CTAG	2 cut(s)	125, 173
BfmI	CTRYAG	3 cut(s)	259, 570, 684
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	4, 274
BmiI	GGNNCC	3 cut(s)	6, 276, 285
BmsI	GCATC	2 cut(s)	84, 325
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	270
BsaWI	WCCGGW	2 cut(s)	280, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	340, 542
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	71, 468
BseNI	ACTGG	1 cut(s)	143
BsePI	GCGCGC	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	5, 547
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	3 cut(s)	225, 281, 582
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	2 cut(s)	270, 601
BsnI	GGCC	2 cut(s)	5, 547
Bso31I	GGTCTC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	3 cut(s)	332, 371, 374
BspANI	GGCC	2 cut(s)	5, 547
BspCNI	CTCAG	2 cut(s)	70, 469
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	6, 276, 285
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	143
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	4 cut(s)	57, 68, 110, 477
BstF5I	GGATG	2 cut(s)	340, 542
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	95, 97
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	270, 601
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstSFI	CTRYAG	3 cut(s)	259, 570, 684
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	5, 547
BtsCI	GGATG	2 cut(s)	340, 542
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	2 cut(s)	95, 97
Cfr13I	GGNCC	2 cut(s)	4, 274
Csp6I	GTAC	3 cut(s)	122, 146, 284
CspCI	CAANNNNNGTGG	2 cut(s)	595, 630
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	8 cut(s)	5, 20, 43, 176, 224, 442, 476, 547
CviKI_1	RGCY	8 cut(s)	5, 20, 43, 176, 224, 442, 476, 547
CviQI	GTAC	3 cut(s)	122, 146, 284
DdeI	CTNAG	4 cut(s)	57, 68, 110, 477
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DriI	GACNNNNNGTC	1 cut(s)	262
Eam1105I	GACNNNNNGTC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	313
FaiI	YATR	8 cut(s)	311, 398, 487, 489, 572, 578, 626, 659
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	347, 549
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	125, 173
GlaI	GCGC	2 cut(s)	94, 96
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	5, 547
HapII	CCGG	3 cut(s)	225, 281, 582
HhaI	GCGC	2 cut(s)	95, 97
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	2 cut(s)	93, 95
HinP1I	GCGC	2 cut(s)	93, 95
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	3 cut(s)	55, 602, 705
HpaII	CCGG	3 cut(s)	225, 281, 582
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	87, 162, 256
Hpy188I	TCNGA	3 cut(s)	139, 516, 601
Hpy8I	GTNNAC	3 cut(s)	87, 162, 256
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	2 cut(s)	164, 447
HpyCH4V	TGCA	2 cut(s)	309, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	4 cut(s)	57, 68, 110, 477
HpySE526I	ACGT	2 cut(s)	164, 447
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	2 cut(s)	93, 95
KpnI	GGTACC	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	48, 584
LweI	GCATC	2 cut(s)	84, 325
MaeI	CTAG	2 cut(s)	125, 173
MaeII	ACGT	2 cut(s)	164, 447
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	143, 368
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	2 cut(s)	34, 384
MlyI	GAGTC	2 cut(s)	49, 714
MnlI	CCTC	4 cut(s)	288, 472, 553, 614
MroXI	GAANNNNTTC	1 cut(s)	232
MspI	CCGG	3 cut(s)	225, 281, 582
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	6, 276, 285
NmuCI	GTSAC	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	452
PauI	GCGCGC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	2 cut(s)	49, 713
PpsI	GAGTC	2 cut(s)	49, 713
Psp1406I	AACGTT	1 cut(s)	164
PspN4I	GGNNCC	3 cut(s)	6, 276, 285
PspPI	GGNCC	2 cut(s)	4, 274
PteI	GCGCGC	1 cut(s)	93
RsaI	GTAC	3 cut(s)	123, 147, 285
RsaNI	GTAC	3 cut(s)	122, 146, 284
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	2 cut(s)	4, 274
SchI	GAGTC	2 cut(s)	49, 714
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	84, 325
SfcI	CTRYAG	3 cut(s)	259, 570, 684
SfuI	TTCGAA	1 cut(s)	452
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	2 cut(s)	34, 384
SsiI	CCGC	3 cut(s)	332, 371, 374
SspMI	CTAG	2 cut(s)	125, 173
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	2 cut(s)	167, 450
TaqI	TCGA	1 cut(s)	452
TasI	AATT	2 cut(s)	34, 384
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	602
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	2 cut(s)	125, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.