RchiOBHm_Chr2g0165771

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000138
Physical Location & Seq
Forward (+)
80643060 .. 80643935
876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53370

Sequence Viewer

Length: 876 bp
ATGCACCATGCCGTGCTTGATGGCAAATCTTCAACCATGTTTTTCAAATCCTGGGCTCACATATGCAAACATGGTTCAGCTGTTTCGTTGCCGGATCTGCTGAAACCATGTTACAGTGACAGACAGGCCATCAAGGATCCCATGGGGCTCGCAGCAATCTACTCGAATGACTGGTTGAGATTTGGGGGGTCTAACAAAAGAAGCTTACTGTTTCGGGAGACTAAATATTCACCGGGCACAATTCGAGGTACGTTTGAATTCACTCAAGCGAATATACAAAAACTTAGAGGACATGTCAAGACTGCAGTGGATTCTGATTCAGCTCATCTGTCATCATTTTCTCTAACATGTGGCTATACATGGGCTTGCTTAGTCAAGGCAGAAGAAATAAAATCTGACCAAGTATGGATAGTCTTTAGTGTGGACTGTAGGTCTCGCTTAGACCCTCCAGTTTCGGCAACATACTTTGGGAACTGCATTATAGGTCATATAGCAGTTGCAGAAACAAAAGGACTCTTGGGAGAAGATGGGTGGATTGTAGCTGTGAATGCAATTAGTGAAAGTATAAAGGCTTTGGATGGAAGTGGGGGACTTTTCAATGGGGCAGAGACTTGGGTTTCAAAGATGTGCAGTGCGAAGGGGACTGAGAGATTTTTTTCGGTAGCTGGTTCAAGTAGGTTTGAGATTTATGACACGAATTTCGGATGGGGAAGACCAAAAAAGACTGACGTTGTTTCCATAGATATGACAGGAGCAATCTCACTCTCTGATAGCAGGAATGGTGGTGGTGGTGTTGAGGTTGGGCTGGTTTTGAAAGAATCAAATATGGAAGTATTTGCTTCTCTATTTGCTATAGGTCTTGAAGACCTTAATTAA

Protein Analysis

291

Amino Acids

31.59

Weight (kDa)

6.65

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 281 8.2e-30 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 102, 131, 144
AcsI RAATTY 2 cut(s) 257, 697
AfaI GTAC 1 cut(s) 250
AflIII ACRYGT 2 cut(s) 292, 347
AgsI TTSAA 8 cut(s) 33, 46, 257, 598, 621, 672, 814, 863
AhdI GACNNNNNGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 5 cut(s) 80, 204, 323, 542, 665
AluI AGCT 5 cut(s) 80, 204, 323, 542, 665
Alw26I GTCTC 3 cut(s) 212, 438, 602
AlwI GGATC 3 cut(s) 102, 131, 144
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 257, 697
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 136
BanII GRGCYC 2 cut(s) 58, 150
BbsI GAAGAC 2 cut(s) 718, 870
BbvI GCAGC 1 cut(s) 164
BccI CCATC 5 cut(s) 14, 137, 521, 572, 699
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BciT130I CCWGG 1 cut(s) 52
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 3 cut(s) 212, 438, 602
BfmI CTRYAG 3 cut(s) 303, 427, 852
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 52, 234
BmeRI GACNNNNNGTC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 52, 234
BpiI GAAGAC 2 cut(s) 718, 870
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 51, 141
Bse1I ACTGG 2 cut(s) 176, 449
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 51, 141
BseGI GGATG 2 cut(s) 583, 710
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 2 cut(s) 176, 449
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 649
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 92, 233
BslFI GGGAC 2 cut(s) 603, 655
BsmAI GTCTC 3 cut(s) 212, 438, 602
BsmFI GGGAC 2 cut(s) 603, 655
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 438
Bsp1286I GDGCHC 3 cut(s) 58, 150, 239
Bsp143I GATC 2 cut(s) 94, 136
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 3 cut(s) 102, 131, 144
BspTNI GGTCTC 1 cut(s) 438
BsrI ACTGG 2 cut(s) 176, 449
BssECI CCNNGG 2 cut(s) 51, 141
BssMI GATC 2 cut(s) 94, 136
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 3 cut(s) 116, 210, 428
BstC8I GCNNGC 2 cut(s) 150, 367
BstDEI CTNAG 4 cut(s) 284, 370, 439, 645
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 583, 710
BstKTI GATC 2 cut(s) 97, 139
BstMAI GTCTC 3 cut(s) 212, 438, 602
BstMBI GATC 2 cut(s) 94, 136
BstMWI GCNNNNNNNGC 2 cut(s) 97, 548
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 2 cut(s) 296, 351
BstSCI CCNGG 2 cut(s) 50, 232
BstSFI CTRYAG 3 cut(s) 303, 427, 852
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 2 cut(s) 718, 870
BstX2I RGATCY 2 cut(s) 94, 136
BstYI RGATCY 2 cut(s) 94, 136
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 583, 710
BtsI GCAGTG 2 cut(s) 312, 637
BtsIMutI CAGTG 3 cut(s) 121, 312, 637
Cac8I GCNNGC 2 cut(s) 150, 367
Csp6I GTAC 1 cut(s) 249
CviAII CATG 8 cut(s) 8, 37, 71, 108, 142, 293, 348, 360
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 4 cut(s) 284, 370, 439, 645
DpnI GATC 2 cut(s) 96, 138
DpnII GATC 2 cut(s) 94, 136
DriI GACNNNNNGTC 1 cut(s) 430
Eam1105I GACNNNNNGTC 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 58, 150
Eco31I GGTCTC 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 58, 150
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 8 cut(s) 11, 40, 74, 111, 145, 296, 351, 363
FaqI GGGAC 2 cut(s) 603, 655
FatI CATG 8 cut(s) 7, 36, 70, 107, 141, 292, 347, 359
FauNDI CATATG 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 590, 717
FriOI GRGCYC 2 cut(s) 58, 150
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 92, 233
Hin1II CATG 8 cut(s) 11, 40, 74, 111, 145, 296, 351, 363
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 4 cut(s) 311, 317, 513, 818
HpaII CCGG 2 cut(s) 92, 233
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 4 cut(s) 316, 397, 704, 769
Hpy188III TCNNGA 3 cut(s) 215, 298, 860
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 631
HpyCH4III ACNGT 3 cut(s) 116, 210, 428
HpyCH4IV ACGT 2 cut(s) 251, 729
HpyCH4V TGCA 7 cut(s) 4, 66, 305, 477, 500, 551, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 548
HpyF3I CTNAG 4 cut(s) 284, 370, 439, 645
HpySE526I ACGT 2 cut(s) 251, 729
Hsp92II CATG 8 cut(s) 11, 40, 74, 111, 145, 296, 351, 363
Kzo9I GATC 2 cut(s) 94, 136
LmnI GCTCC 1 cut(s) 752
Lsp1109I GCAGC 1 cut(s) 164
MaeII ACGT 2 cut(s) 251, 729
MaeIII GTNAC 2 cut(s) 110, 116
MalI GATC 2 cut(s) 96, 138
MboI GATC 2 cut(s) 94, 136
MboII GAAGA 5 cut(s) 21, 395, 536, 723, 875
MflI RGATCY 2 cut(s) 94, 136
MhlI GDGCHC 3 cut(s) 58, 150, 239
MluCI AATT 5 cut(s) 240, 257, 552, 697, 871
MlyI GAGTC 1 cut(s) 507
MnlI CCTC 4 cut(s) 239, 281, 456, 790
MseI TTAA 2 cut(s) 870, 874
MslI CAYNNNNRTG 1 cut(s) 743
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 92, 233
MspR9I CCNGG 2 cut(s) 52, 234
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 97, 548
NciI CCSGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 62
NdeII GATC 2 cut(s) 94, 136
NlaIII CATG 8 cut(s) 11, 40, 74, 111, 145, 296, 351, 363
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 2 cut(s) 296, 351
PacI TTAATTAA 1 cut(s) 874
PciI ACATGT 2 cut(s) 292, 347
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 3 cut(s) 311, 317, 818
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 507
PscI ACATGT 2 cut(s) 292, 347
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 2 cut(s) 94, 136
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 2 cut(s) 870, 874
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 94, 136
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 2 cut(s) 52, 234
SduI GDGCHC 3 cut(s) 58, 150, 239
SfcI CTRYAG 3 cut(s) 303, 427, 852
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 5 cut(s) 240, 257, 552, 697, 871
SspI AATATT 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 50, 232
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 116, 210, 428
TaiI ACGT 2 cut(s) 254, 732
TaqI TCGA 2 cut(s) 164, 244
TasI AATT 5 cut(s) 240, 257, 552, 697, 871
TfiI GAWTC 3 cut(s) 311, 317, 818
Tru1I TTAA 2 cut(s) 870, 874
Tru9I TTAA 2 cut(s) 870, 874
TscAI CASTG 3 cut(s) 121, 312, 637
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 3 cut(s) 121, 312, 637
XapI RAATTY 2 cut(s) 257, 697
XceI RCATGY 2 cut(s) 296, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.