Rroxscaffold_2G00085550

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000138
Physical Location & Seq
Reverse (-)
7796880 .. 7799005
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085550.1

Sequence Viewer

Length: 855 bp
ATGGGCGCACTCTGCAAACATCAAGGGTTGACTTCATCTTCGTTACCAGACCAGCTCAAACCCTTCTACGACAGAAGCCTCATCCAAGACCATAAGGGGCTCGGAACACTCTTCGCAAACCAATACCAAGCCATGGACGGTCCCAACAACAGAAGCTTAATGGTCTGGGAGCTTCAAGTTCCCCAAGACTCAATTCGAGGCACCTTCGAACTCACTCGTGCATTTATCCAATCACTCAGAGGGCATGTCTTGGCTGCAATAGGTTCTGATACGATTCTCCGTTTGTCAACGTTTTCTCTAGCCTGTGCCTATACATGGGTTTGCTTAGTAAAGGCTGAAGAAACAAAAGAAGATAAAGCACGAATCATCTTTTCCGTGGACTGTAGGTCTCGGCTAGACCCTCCTTTACCTGCAACATATTTCGGGAACTGCTTAGTGGGCTGTCTGGTAGTTGCAGAAACAAAAGATCTACTGGGAGAACATGGGTTGGTTGTGGCATTAAGTGCAATTAGTGAAGCTTTGAGGAACTTTGAAAAGAAGGGGATTTTGAACGGAGCTGAAAATTGGGTTTCAATATTGAGCAGTGTGCGTACAGGTAGACTGGTTGGCATTGCTGGCTCACATCAGTTTCGTGCGTATGAAACTGATTTTGGATGGGGATCACCAAGCAAGGTCGAGGTTGTTTCCATAGATAGGACAGGAGCCATCTCCTTGACAGATAGCAAGAACGGTGGTGGAGGCGTGGACGTTGGGTTGGTCTTGAAGAAACATCACATGGATGCTTTCGCTTCTCTATTTGCCAAAGGTCTCAAAAAACCATTCAAGAATTTGAAGCCAAATTACATGTATATATAA

Protein Analysis

284

Amino Acids

31.05

Weight (kDa)

8.83

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 96 - 264 7.9e-27 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 133
AccI GTMKAC 1 cut(s) 598
AclI AACGTT 1 cut(s) 290
AclWI GGATC 1 cut(s) 667
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 3 cut(s) 133, 315, 693
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 7 cut(s) 176, 533, 550, 573, 763, 823, 832
AhdI GACNNNNNGTC 1 cut(s) 385
AjuI GAANNNNNNNTTGG 4 cut(s) 177, 209, 633, 665
AluBI AGCT 5 cut(s) 55, 156, 172, 518, 557
AluI AGCT 5 cut(s) 55, 156, 172, 518, 557
Alw26I GTCTC 2 cut(s) 393, 812
AlwI GGATC 1 cut(s) 667
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 826
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 654
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 1 cut(s) 824
BauI CACGAG 1 cut(s) 216
BbvI GCAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 648, 713
BcoDI GTCTC 2 cut(s) 393, 812
BfaI CTAG 2 cut(s) 299, 395
BfmI CTRYAG 1 cut(s) 382
BfuAI ACCTGC 1 cut(s) 418
BglII AGATCT 1 cut(s) 466
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 140
BmeRI GACNNNNNGTC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 3 cut(s) 142, 202, 703
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 1 cut(s) 769
BmuI ACTGGG 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 658
BsaI GGTCTC 2 cut(s) 393, 812
BsaJI CCNNGG 2 cut(s) 132, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 315, 693
Bse1I ACTGG 2 cut(s) 477, 606
Bse3DI GCAATG 1 cut(s) 609
Bse8I GATNNNNATC 1 cut(s) 658
BseDI CCNNGG 2 cut(s) 132, 375
BseGI GGATG 3 cut(s) 81, 659, 784
BseJI GATNNNNATC 1 cut(s) 658
BseLI CCNNNNNNNGG 3 cut(s) 133, 315, 693
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 2 cut(s) 477, 606
BseXI GCAGC 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 200
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 3 cut(s) 133, 315, 693
BsmAI GTCTC 2 cut(s) 393, 812
BsmFI GGGAC 1 cut(s) 126
Bso31I GGTCTC 2 cut(s) 393, 812
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 466, 659
Bsp19I CCATGG 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 142, 202, 703
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 2 cut(s) 393, 812
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 2 cut(s) 477, 606
BssECI CCNNGG 2 cut(s) 132, 375
BssMI GATC 2 cut(s) 466, 659
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 140, 383, 731
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 3 cut(s) 236, 325, 433
BstDSI CCRYGG 2 cut(s) 132, 375
BstF5I GGATG 3 cut(s) 81, 659, 784
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 2 cut(s) 469, 662
BstMAI GTCTC 2 cut(s) 393, 812
BstMBI GATC 2 cut(s) 466, 659
BstMWI GCNNNNNNNGC 4 cut(s) 12, 438, 503, 615
BstNSI RCATGY 2 cut(s) 248, 847
BstSFI CTRYAG 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BtgI CCRYGG 2 cut(s) 132, 375
BtsCI GGATG 3 cut(s) 81, 659, 784
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 616
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 591
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 6 cut(s) 133, 245, 315, 482, 775, 844
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 3 cut(s) 236, 325, 433
DpnI GATC 2 cut(s) 468, 661
DpnII GATC 2 cut(s) 466, 659
DriI GACNNNNNGTC 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 116
Eam1105I GACNNNNNGTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 2 cut(s) 393, 812
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 6 cut(s) 136, 248, 318, 485, 778, 847
FaqI GGGAC 1 cut(s) 126
FatI CATG 6 cut(s) 132, 244, 314, 481, 774, 843
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 3 cut(s) 68, 666, 791
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 299, 395
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 255
HhaI GCGC 1 cut(s) 8
Hin1II CATG 6 cut(s) 136, 248, 318, 485, 778, 847
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 2 cut(s) 30, 288
HindII GTYRAC 2 cut(s) 30, 288
HindIII AAGCTT 2 cut(s) 154, 516
HinfI GANTC 3 cut(s) 188, 274, 363
HphI GGTGA 1 cut(s) 654
Hpy166II GTNNAC 5 cut(s) 30, 288, 379, 599, 745
Hpy188I TCNGA 3 cut(s) 104, 239, 268
Hpy188III TCNNGA 3 cut(s) 424, 760, 823
Hpy8I GTNNAC 5 cut(s) 30, 288, 379, 599, 745
HpyAV CCTTC 3 cut(s) 73, 214, 532
HpyCH4III ACNGT 3 cut(s) 140, 383, 731
HpyCH4IV ACGT 2 cut(s) 290, 747
HpyCH4V TGCA 6 cut(s) 15, 221, 257, 413, 455, 506
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 438, 503, 615
HpyF3I CTNAG 3 cut(s) 236, 325, 433
HpySE526I ACGT 2 cut(s) 290, 747
Hsp92II CATG 6 cut(s) 136, 248, 318, 485, 778, 847
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 466, 659
LmnI GCTCC 3 cut(s) 169, 554, 701
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 769
MaeI CTAG 2 cut(s) 299, 395
MaeII ACGT 2 cut(s) 290, 747
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 468, 661
MboI GATC 2 cut(s) 466, 659
MboII GAAGA 5 cut(s) 30, 103, 350, 362, 775
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 5 cut(s) 192, 507, 562, 826, 838
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 7 cut(s) 89, 191, 233, 411, 516, 670, 731
MseI TTAA 2 cut(s) 158, 500
MslI CAYNNNNRTG 1 cut(s) 777
MwoI GCNNNNNNNGC 4 cut(s) 12, 438, 503, 615
NcoI CCATGG 1 cut(s) 132
NdeII GATC 2 cut(s) 466, 659
NlaIII CATG 6 cut(s) 136, 248, 318, 485, 778, 847
NlaIV GGNNCC 3 cut(s) 142, 202, 703
NmeAIII GCCGAG 1 cut(s) 370
NspI RCATGY 2 cut(s) 248, 847
NspV TTCGAA 1 cut(s) 207
PciI ACATGT 1 cut(s) 843
PfeI GAWTC 2 cut(s) 274, 363
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PscI ACATGT 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 290
PspN4I GGNNCC 3 cut(s) 142, 202, 703
PspPI GGNCC 1 cut(s) 140
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 777
SaqAI TTAA 2 cut(s) 158, 500
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 466, 659
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 777
Sse9I AATT 5 cut(s) 192, 507, 562, 826, 838
SspI AATATT 1 cut(s) 576
SspMI CTAG 2 cut(s) 299, 395
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 140, 383, 731
TaiI ACGT 2 cut(s) 293, 750
TaqI TCGA 3 cut(s) 196, 207, 675
TasI AATT 5 cut(s) 192, 507, 562, 826, 838
TfiI GAWTC 2 cut(s) 274, 363
Tru1I TTAA 2 cut(s) 158, 500
Tru9I TTAA 2 cut(s) 158, 500
TscAI CASTG 1 cut(s) 589
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 24, 654
TspGWI ACGGA 3 cut(s) 269, 364, 567
TspRI CASTG 1 cut(s) 589
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 826
XceI RCATGY 2 cut(s) 248, 847
XmiI GTMKAC 1 cut(s) 598
XspI CTAG 2 cut(s) 299, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.