Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020734.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Forward (+)

333 .. 1120

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgccgcacccaaacacatctgtccagatagtggaggtttgcagggtgacaccgcaaccaaactcaccggactccaccgctgacacaccagatctgtcccttcctctaacctactttgacctattttggctgaggtttccacctgttcaacggctttacttctatgaattaacatcttctcactctaattttgtgcttgaaaatctcaaatcctccctctctctcgttctccaacacttcctacctctcgccggaaacctaacttggccccaagactcccacactcccatcctccgctacttccaaggcgacgccgtttcattcacagtagccgagtccgatgctgataacttcgaccacctttcaggctacggtgagtttattgaggccaaagattaccatcctcttgttccgagattggacgtctctcacgagcaagctgcagccattgcattgcaggtaaccctatttccgagtcgcggctttgtcatcggaacaaccatgcaccatgccatccttgacggcaaaacctcaacctcgtttgttaaatcgtgggctcatgcatgccagcgtatgatagttaacaatggcgtttccgctgactcggattttttgttaccggatcagctcaagccgttatatgacagaacgcgaatggcaaaacatggacgggccagacaacaaaagcgtaatgtgggatatgaaaactccactaccagactcagttcgaagaatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

246

Amino Acids

27.72

Weight (kDa)

6.4

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	2 cut(s)	480, 652
AciI	CCGC	6 cut(s)	5, 53, 78, 295, 480, 597
AclWI	GGATC	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	312, 423
AfiI	CCNNNNNNNGG	3 cut(s)	31, 251, 479
AgsI	TTSAA	2 cut(s)	149, 200
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	2 cut(s)	440, 628
AluI	AGCT	2 cut(s)	440, 628
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	630
AoxI	GGCC	3 cut(s)	266, 387, 672
ApeKI	GCWGC	2 cut(s)	440, 443
AspS9I	GGNCC	2 cut(s)	267, 672
AsuHPI	GGTGA	3 cut(s)	57, 58, 386
AsuII	TTCGAA	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	559
BauI	CACGAG	1 cut(s)	431
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	427, 455
BccI	CCATC	3 cut(s)	296, 408, 521
BceAI	ACGGC	4 cut(s)	167, 299, 538, 619
BcgI	CGANNNNNNTGC	4 cut(s)	323, 357, 422, 456
BcoDI	GTCTC	1 cut(s)	430
BfmI	CTRYAG	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	448
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	4 cut(s)	5, 441, 444, 481
BlsI	GCNGC	4 cut(s)	6, 442, 445, 482
BmgT120I	GGNCC	2 cut(s)	267, 672
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	614
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	312, 423
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	67, 619
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 251, 479
Bse3DI	GCAATG	2 cut(s)	447, 452
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	3 cut(s)	288, 400, 513
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	31, 251, 479
BseMI	GCAATG	2 cut(s)	447, 452
BseMII	CTCAG	2 cut(s)	122, 736
BseXI	GCAGC	2 cut(s)	427, 455
Bsh1236I	CGCG	2 cut(s)	480, 652
BshFI	GGCC	3 cut(s)	268, 389, 674
BsiSI	CCGG	3 cut(s)	68, 252, 620
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	31, 251, 479
BsmAI	GTCTC	1 cut(s)	430
BsmBI	CGTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	268, 389, 674
Bsp119I	TTCGAA	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	2 cut(s)	91, 622
BspACI	CCGC	6 cut(s)	5, 53, 78, 295, 480, 597
BspANI	GGCC	3 cut(s)	268, 389, 674
BspCNI	CTCAG	2 cut(s)	123, 735
BspFNI	CGCG	2 cut(s)	480, 652
BspLI	GGNNCC	1 cut(s)	269
BspMAI	CTGCAG	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	630
BspT104I	TTCGAA	1 cut(s)	728
BsrDI	GCAATG	2 cut(s)	447, 452
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	91, 622
BssNI	GRCGYC	2 cut(s)	312, 423
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	328, 374
BstACI	GRCGYC	2 cut(s)	312, 423
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	728
BstC8I	GCNNGC	3 cut(s)	438, 565, 569
BstDEI	CTNAG	2 cut(s)	131, 722
BstEII	GGTNACC	1 cut(s)	460
BstF5I	GGATG	3 cut(s)	288, 400, 513
BstFNI	CGCG	2 cut(s)	480, 652
BstKTI	GATC	2 cut(s)	94, 625
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	2 cut(s)	91, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	567
BstPI	GGTNACC	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	2 cut(s)	480, 652
BstV1I	GCAGC	2 cut(s)	427, 455
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	268, 389, 674
BtsCI	GGATG	3 cut(s)	288, 400, 513
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	438, 565, 569
Cfr13I	GGNCC	2 cut(s)	267, 672
CseI	GACGC	1 cut(s)	320
CviAII	CATG	5 cut(s)	502, 509, 560, 564, 665
DdeI	CTNAG	2 cut(s)	131, 722
DpnI	GATC	2 cut(s)	93, 624
DpnII	GATC	2 cut(s)	91, 622
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	559
Eco91I	GGTNACC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	5 cut(s)	505, 512, 563, 567, 668
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	5 cut(s)	501, 508, 559, 563, 664
Fnu4HI	GCNGC	4 cut(s)	5, 441, 444, 481
FokI	GGATG	3 cut(s)	275, 387, 500
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	4 cut(s)	5, 441, 444, 481
GluI	GCNGC	4 cut(s)	5, 441, 444, 481
HaeIII	GGCC	3 cut(s)	268, 389, 674
HapII	CCGG	3 cut(s)	68, 252, 620
HgaI	GACGC	1 cut(s)	320
Hin1I	GRCGYC	2 cut(s)	312, 423
Hin1II	CATG	5 cut(s)	505, 512, 563, 567, 668
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	7 cut(s)	71, 275, 335, 475, 602, 720, 733
HpaI	GTTAAC	1 cut(s)	583
HpaII	CCGG	3 cut(s)	68, 252, 620
HphI	GGTGA	3 cut(s)	57, 58, 386
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	5 cut(s)	340, 414, 474, 494, 607
Hpy188III	TCNNGA	2 cut(s)	25, 431
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	328, 374
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	6 cut(s)	42, 443, 452, 457, 505, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	2 cut(s)	131, 722
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	2 cut(s)	312, 423
Hsp92II	CATG	5 cut(s)	505, 512, 563, 567, 668
KspAI	GTTAAC	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	91, 622
Lsp1109I	GCAGC	2 cut(s)	427, 455
LweI	GCATC	1 cut(s)	331
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	46, 460, 615
MalI	GATC	2 cut(s)	93, 624
MboI	GATC	2 cut(s)	91, 622
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	2 cut(s)	167, 187
MlyI	GAGTC	6 cut(s)	65, 269, 344, 484, 596, 714
MmeI	TCCRAC	1 cut(s)	256
Mph1103I	ATGCAT	1 cut(s)	565
MseI	TTAA	3 cut(s)	170, 546, 582
MspA1I	CMGCKG	2 cut(s)	80, 599
MspI	CCGG	3 cut(s)	68, 252, 620
MvnI	CGCG	2 cut(s)	480, 652
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	2 cut(s)	91, 622
NlaIII	CATG	5 cut(s)	505, 512, 563, 567, 668
NlaIV	GGNNCC	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	567
NspV	TTCGAA	1 cut(s)	728
PaeI	GCATGC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	733
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	6, 442, 445, 482
PleI	GAGTC	6 cut(s)	65, 269, 343, 483, 596, 714
PpsI	GAGTC	6 cut(s)	65, 269, 343, 483, 596, 714
PspEI	GGTNACC	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	267, 672
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	170, 546, 582
SatI	GCNGC	4 cut(s)	5, 441, 444, 481
Sau3AI	GATC	2 cut(s)	91, 622
Sau96I	GGNCC	2 cut(s)	267, 672
SchI	GAGTC	6 cut(s)	65, 269, 344, 484, 596, 714
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	441
SfuI	TTCGAA	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SphI	GCATGC	1 cut(s)	567
Sse9I	AATT	2 cut(s)	167, 187
SsiI	CCGC	6 cut(s)	5, 53, 78, 295, 480, 597
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	328, 374
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	354, 728
TasI	AATT	2 cut(s)	167, 187
TauI	GCSGC	2 cut(s)	7, 483
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	3 cut(s)	170, 546, 582
Tru9I	TTAA	3 cut(s)	170, 546, 582
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	440, 443
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	180, 309, 717
Van91I	CCANNNNNTGG	1 cut(s)	31
XceI	RCATGY	1 cut(s)	567
ZraI	GACGTC	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.