pycom17g06030

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000138
Physical Location & Seq
Reverse (-)
4226425 .. 4227423
999 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06030.1

Sequence Viewer

Length: 915 bp
ATGCTTGTGCCCCATTTGCCGATATCCGACGAAAAAGCCATGGCCATGGCATTGCAAATCACTCTATTTGCTAACCACGGCTTTTCTATCGGAACATCCATGCACCATGCGGTCCTCGACGGCAACACTTCAACCCAATTTGGCAGAATGGTCGTCGAGGATCAAGCCCGGCTTGGGTCGATTTACTCGAACCAATTTCTCAACATGGACCGACCCAACAATAGAAGCTTGATGACTAAAGTGCGTACAGATCCAGTTTCACCTGACCTAATTCGAGGCACGTTCCAAGTTACGCGCACAAATCTTGAAGCCCTAAGGCAAACGGTGACGGCCAAGAAGGAACAACAAGAACAATATCAATCGGTTCACTTGTCAACGTTTTCTCTCACATGTGCCTACGCATGGGTTCGCTTAGTCAAGGTTGAGGAGATGAAAGCTGGCGTATCACTCTTCATCTTTAGCGTTGATTGTAGGTCCCGCTTTGACCCTCCTCTACCAGCAAACTATTTTGGCAACTGCTTAACTGGCCGTAAAGCAGTTGCAGAGACAAATGGGCTACTGGGAGAAGATGGGTTGATTGTGGCAGTGAGTGCAATTAGTGAAGCCATAAAAAGTTTGGATGAGGGGGTCTTGAAGGGGGCAGAGAACCGGGTTTCAGGTTTGTACAGTGGCGTGCGTAGCAAAGATCGTACAAAATTTTCCGTTGCTGGCTCACATCGGTTTAAGATTTACGGCACTGATTTTGGATGGGGAAGGCCGAGGAAGACTGACGTCGTTTCGATAGACAGGACAGGAGCGATCTCTCTTGCAGATAGCAAGAATTGTGGCGGAGGTGTTGAGATAGGGTTGGTTTTGAAAAAACATCACATGGATGTTTTTGCTTCTCTGTTTGCCAAAGGTCTTGAGTCCTTATGA

Protein Analysis

305

Amino Acids

33.31

Weight (kDa)

9.12

Isoelectric Point (pI)

25.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 295 1.4e-28 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 774
AccII CGCG 1 cut(s) 295
AciI CCGC 3 cut(s) 110, 478, 828
AclI AACGTT 1 cut(s) 377
AclWI GGATC 2 cut(s) 168, 245
AcoI YGGCCR 3 cut(s) 42, 330, 526
AcsI RAATTY 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 771
AfaI GTAC 3 cut(s) 247, 665, 691
AfiI CCNNNNNNNGG 2 cut(s) 174, 402
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 4 cut(s) 132, 308, 634, 856
AluBI AGCT 2 cut(s) 228, 437
AluI AGCT 2 cut(s) 228, 437
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 2 cut(s) 168, 245
AoxI GGCC 4 cut(s) 42, 330, 526, 755
ApoI RAATTY 1 cut(s) 695
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 3 cut(s) 112, 208, 474
AsuC2I CCSGG 2 cut(s) 169, 650
AsuHPI GGTGA 2 cut(s) 252, 337
AvaII GGWCC 3 cut(s) 112, 208, 474
AxyI CCTNAGG 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 770
BccI CCATC 2 cut(s) 563, 741
BceAI ACGGC 5 cut(s) 94, 136, 345, 513, 748
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BcnI CCSGG 2 cut(s) 169, 650
BcoDI GTCTC 1 cut(s) 539
Bme1390I CCNGG 2 cut(s) 169, 650
Bme18I GGWCC 3 cut(s) 112, 208, 474
BmgT120I GGNCC 3 cut(s) 112, 208, 474
BmiI GGNNCC 1 cut(s) 476
BmrFI CCNGG 2 cut(s) 169, 650
BmrI ACTGGG 1 cut(s) 569
BmuI ACTGGG 1 cut(s) 569
BoxI GACNNNNGTC 1 cut(s) 770
BpiI GAAGAC 1 cut(s) 770
BpuMI CCSGG 2 cut(s) 169, 650
BsaHI GRCGYC 1 cut(s) 771
BsaJI CCNNGG 4 cut(s) 39, 45, 76, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 402
Bse1I ACTGG 3 cut(s) 254, 529, 564
Bse21I CCTNAGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 50
BseDI CCNNGG 4 cut(s) 39, 45, 76, 758
BseGI GGATG 4 cut(s) 95, 625, 752, 877
BseLI CCNNNNNNNGG 2 cut(s) 174, 402
BseMI GCAATG 1 cut(s) 50
BseNI ACTGG 3 cut(s) 254, 529, 564
BseRI GAGGAG 2 cut(s) 440, 480
BseSI GKGCMC 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 44, 332, 528, 757
BsiSI CCGG 2 cut(s) 169, 649
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 2 cut(s) 174, 402
BsmAI GTCTC 1 cut(s) 539
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 4 cut(s) 44, 332, 528, 757
Bsp1286I GDGCHC 1 cut(s) 12
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 4 cut(s) 160, 250, 685, 798
Bsp19I CCATGG 2 cut(s) 39, 45
BspACI CCGC 3 cut(s) 110, 478, 828
BspANI GGCC 4 cut(s) 44, 332, 528, 757
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 476
BspPI GGATC 2 cut(s) 168, 245
BsrDI GCAATG 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 3 cut(s) 254, 529, 564
BssECI CCNNGG 4 cut(s) 39, 45, 76, 758
BssMI GATC 4 cut(s) 160, 250, 685, 798
BssNI GRCGYC 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 39, 45
Bst4CI ACNGT 2 cut(s) 325, 668
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 1 cut(s) 771
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 663
BstC8I GCNNGC 3 cut(s) 439, 674, 709
BstDEI CTNAG 2 cut(s) 314, 412
BstDSI CCRYGG 3 cut(s) 39, 45, 76
BstF5I GGATG 4 cut(s) 95, 625, 752, 877
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 4 cut(s) 163, 253, 688, 801
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 4 cut(s) 160, 250, 685, 798
BstMWI GCNNNNNNNGC 4 cut(s) 16, 525, 590, 678
BstNSI RCATGY 1 cut(s) 393
BstPAI GACNNNNGTC 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 167, 648
BstSLI GKGCMC 1 cut(s) 12
BstUI CGCG 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 770
BstX2I RGATCY 1 cut(s) 250
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 4 cut(s) 44, 332, 528, 757
BtgI CCRYGG 3 cut(s) 39, 45, 76
BtsCI GGATG 4 cut(s) 95, 625, 752, 877
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 3 cut(s) 591, 673, 735
Cac8I GCNNGC 3 cut(s) 439, 674, 709
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 3 cut(s) 112, 208, 474
Csp6I GTAC 3 cut(s) 246, 664, 690
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 8 cut(s) 40, 46, 100, 107, 205, 390, 402, 868
CviQI GTAC 3 cut(s) 246, 664, 690
DdeI CTNAG 2 cut(s) 314, 412
DpnI GATC 4 cut(s) 162, 252, 687, 800
DpnII GATC 4 cut(s) 160, 250, 685, 798
EaeI YGGCCR 3 cut(s) 42, 330, 526
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
EciI GGCGGA 1 cut(s) 843
Eco130I CCWWGG 2 cut(s) 39, 45
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 3 cut(s) 112, 208, 474
Eco81I CCTNAGG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 474
EcoRV GATATC 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 39, 45
ErhI CCWWGG 2 cut(s) 39, 45
FaeI CATG 8 cut(s) 43, 49, 103, 110, 208, 393, 405, 871
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 460
FatI CATG 8 cut(s) 39, 45, 99, 106, 204, 389, 401, 867
FauI CCCGC 1 cut(s) 485
FokI GGATG 4 cut(s) 82, 632, 759, 884
GlaI GCGC 1 cut(s) 296
HaeIII GGCC 4 cut(s) 44, 332, 528, 757
HapII CCGG 2 cut(s) 169, 649
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 771
Hin1II CATG 8 cut(s) 43, 49, 103, 110, 208, 393, 405, 871
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 1 cut(s) 905
HpaII CCGG 2 cut(s) 169, 649
HphI GGTGA 2 cut(s) 252, 337
Hpy166II GTNNAC 2 cut(s) 367, 375
Hpy188I TCNGA 2 cut(s) 28, 92
Hpy188III TCNNGA 3 cut(s) 305, 631, 902
Hpy8I GTNNAC 2 cut(s) 367, 375
Hpy99I CGWCG 4 cut(s) 32, 122, 158, 776
HpyAV CCTTC 3 cut(s) 331, 628, 747
HpyCH4III ACNGT 2 cut(s) 325, 668
HpyCH4IV ACGT 3 cut(s) 281, 377, 771
HpyCH4V TGCA 5 cut(s) 55, 103, 542, 593, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 525, 590, 678
HpyF3I CTNAG 2 cut(s) 314, 412
HpySE526I ACGT 3 cut(s) 281, 377, 771
Hsp92I GRCGYC 1 cut(s) 771
Hsp92II CATG 8 cut(s) 43, 49, 103, 110, 208, 393, 405, 871
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 4 cut(s) 160, 250, 685, 798
LmnI GCTCC 1 cut(s) 794
MaeII ACGT 3 cut(s) 281, 377, 771
MaeIII GTNAC 2 cut(s) 289, 325
MalI GATC 4 cut(s) 162, 252, 687, 800
MboI GATC 4 cut(s) 160, 250, 685, 798
MboII GAAGA 3 cut(s) 442, 578, 775
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 6 cut(s) 137, 194, 270, 594, 695, 820
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 914
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 9 cut(s) 125, 151, 269, 418, 498, 501, 616, 753, 824
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 521, 723
MslI CAYNNNNRTG 2 cut(s) 44, 870
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 2 cut(s) 169, 649
MspR9I CCNGG 2 cut(s) 169, 650
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 4 cut(s) 16, 525, 590, 678
NciI CCSGG 2 cut(s) 169, 650
NcoI CCATGG 2 cut(s) 39, 45
NdeII GATC 4 cut(s) 160, 250, 685, 798
NlaIII CATG 8 cut(s) 43, 49, 103, 110, 208, 393, 405, 871
NlaIV GGNNCC 1 cut(s) 476
NmeAIII GCCGAG 1 cut(s) 783
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 393
PciI ACATGT 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PleI GAGTC 1 cut(s) 913
PpsI GAGTC 1 cut(s) 913
PpuMI RGGWCCY 1 cut(s) 474
PscI ACATGT 1 cut(s) 389
PshAI GACNNNNGTC 1 cut(s) 770
Psp1406I AACGTT 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 476
PspPI GGNCC 3 cut(s) 112, 208, 474
PspPPI RGGWCCY 1 cut(s) 474
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 3 cut(s) 247, 665, 691
RsaNI GTAC 3 cut(s) 246, 664, 690
RseI CAYNNNNRTG 2 cut(s) 44, 870
SaqAI TTAA 2 cut(s) 521, 723
Sau3AI GATC 4 cut(s) 160, 250, 685, 798
Sau96I GGNCC 3 cut(s) 112, 208, 474
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 2 cut(s) 169, 650
SduI GDGCHC 1 cut(s) 12
SinI GGWCC 3 cut(s) 112, 208, 474
SmiMI CAYNNNNRTG 2 cut(s) 44, 870
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 6 cut(s) 137, 194, 270, 594, 695, 820
SsiI CCGC 3 cut(s) 110, 478, 828
StyD4I CCNGG 2 cut(s) 167, 648
StyI CCWWGG 2 cut(s) 39, 45
TaaI ACNGT 2 cut(s) 325, 668
TaiI ACGT 3 cut(s) 284, 380, 774
TaqI TCGA 6 cut(s) 117, 156, 179, 188, 274, 779
TaqII GACCGA 1 cut(s) 225
TasI AATT 6 cut(s) 137, 194, 270, 594, 695, 820
TatI WGTACW 1 cut(s) 663
Tru1I TTAA 2 cut(s) 521, 723
Tru9I TTAA 2 cut(s) 521, 723
TscAI CASTG 3 cut(s) 591, 673, 742
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 442, 446
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 3 cut(s) 591, 673, 742
VpaK11BI GGWCC 3 cut(s) 112, 208, 474
XapI RAATTY 1 cut(s) 695
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
ZraI GACGTC 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.