Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

11549418 .. 11551369

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACCAAGGACGAGAGCAATGGTGACAATCCTGACGATGGTGATGCGGCAAAGGAGAATATAACGGTGGGAAGGCTTGCTCTTCAAGTGGTCGAGTCCGAAGCTGACTTCTCTTATATCTCTAGCAAAGAACTTCGTCTGGAGGCTGAATTACGTCCTCTTGTCCCCGAGTTACAAGTTTCCTCTGACTCAGCATCGATTCTGTCTATACAAATCACTTTTTTCCCAAACCAAGGCTTTTCCATTGGAACCATAGTTCACCATGTCGTCATGGACGGCAAAACAGCGTCCAAGTTTTACAAAGCTTGGGCTCATATATGTAAACACGGGAACATACCACAAGATTTTGATCTACCTATGGTTTTAGATCGTACGGTCATCAATGTTCCGGCCGGACTCGAACCAAAACTCTTTCAACTCTTGCCATATCTCTCAAAGGAGAAAGTCAATGCAAGAAATTTAATGCTGCCTCCCGCTAAAGAGAACATCAACGTGGTTCGGGTCACGCTCGAGTTGAGTGAAGCGAACATCAAGAAACTTAAAGAACAAGCCAAGAACGAGTCAACTTGGTCCGATCTTCTTCTATCAACGTTTGTAGTCACGTACGAAAAATCATCTGGCCAGTCCCTTTTTTGCAAAGAGGAAGCCAAAAAATCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

220

Amino Acids

24.48

Weight (kDa)

5.48

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	43 - 189	5.1e-12	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	47, 474
AclI	AACGTT	1 cut(s)	590
AcoI	YGGCCR	2 cut(s)	390, 619
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	2 cut(s)	373, 605
AfiI	CCNNNNNNNGG	2 cut(s)	38, 233
AgsI	TTSAA	2 cut(s)	86, 416
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	2 cut(s)	104, 305
AluI	AGCT	2 cut(s)	104, 305
Ama87I	CYCGRG	2 cut(s)	167, 509
AoxI	GGCC	2 cut(s)	390, 619
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	35, 53, 251
AvaI	CYCGRG	2 cut(s)	167, 509
AvaII	GGWCC	1 cut(s)	570
BalI	TGGCCA	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	48, 467
BlsI	GCNGC	2 cut(s)	49, 468
Bme18I	GGWCC	1 cut(s)	570
BmeT110I	CYCGRG	2 cut(s)	167, 509
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	2 cut(s)	34, 203
BpmI	CTGGAG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	6, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 233
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	348
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	6, 232
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	38, 233
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	622
BseX3I	CGGCCG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	392, 621
BshVI	ATCGAT	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	167, 509
BsiSI	CCGG	2 cut(s)	389, 393
BsiWI	CGTACG	2 cut(s)	371, 603
BslFI	GGGAC	2 cut(s)	149, 610
BslI	CCNNNNNNNGG	2 cut(s)	38, 233
BsmFI	GGGAC	2 cut(s)	149, 610
BsnI	GGCC	2 cut(s)	392, 621
BsoBI	CYCGRG	2 cut(s)	167, 509
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	349, 367, 574
BspACI	CCGC	2 cut(s)	47, 474
BspANI	GGCC	2 cut(s)	392, 621
BspCNI	CTCAG	1 cut(s)	203
BspDI	ATCGAT	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	6, 232
BssMI	GATC	3 cut(s)	349, 367, 574
BssT1I	CCWWGG	2 cut(s)	6, 232
Bst4CI	ACNGT	2 cut(s)	67, 376
Bst6I	CTCTTC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	352, 370, 577
BstMBI	GATC	3 cut(s)	349, 367, 574
BstMCI	CGRYCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	453
BstZI	CGGCCG	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	392, 621
BsuTUI	ATCGAT	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	570
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	372, 604
CviAII	CATG	2 cut(s)	263, 271
CviQI	GTAC	2 cut(s)	372, 604
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	3 cut(s)	351, 369, 576
DpnII	GATC	3 cut(s)	349, 367, 574
EaeI	YGGCCR	2 cut(s)	390, 619
EagI	CGGCCG	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EclXI	CGGCCG	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	6, 232
Eco24I	GRGCYC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	570
Eco52I	CGGCCG	1 cut(s)	390
Eco88I	CYCGRG	2 cut(s)	167, 509
EcoT14I	CCWWGG	2 cut(s)	6, 232
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	2 cut(s)	6, 232
FaeI	CATG	2 cut(s)	266, 274
FaqI	GGGAC	2 cut(s)	149, 610
FatI	CATG	2 cut(s)	262, 270
FauI	CCCGC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	48, 467
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	48, 467
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	48, 467
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	392, 621
HapII	CCGG	2 cut(s)	389, 393
HgaI	GACGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	266, 274
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	5 cut(s)	95, 188, 199, 396, 560
HpaII	CCGG	2 cut(s)	389, 393
HphI	GGTGA	3 cut(s)	35, 53, 251
Hpy166II	GTNNAC	3 cut(s)	259, 323, 564
Hpy188I	TCNGA	3 cut(s)	100, 187, 574
Hpy188III	TCNNGA	3 cut(s)	32, 140, 532
Hpy8I	GTNNAC	3 cut(s)	259, 323, 564
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	2 cut(s)	67, 376
HpyCH4IV	ACGT	4 cut(s)	154, 492, 590, 602
HpyCH4V	TGCA	2 cut(s)	452, 636
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	4 cut(s)	154, 492, 590, 602
Hsp92II	CATG	2 cut(s)	266, 274
Kzo9I	GATC	3 cut(s)	349, 367, 574
LguI	GCTCTTC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	45, 125, 402, 406, 603, 635
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	2 cut(s)	34, 203
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	4 cut(s)	154, 492, 590, 602
MaeIII	GTNAC	4 cut(s)	23, 171, 502, 598
MalI	GATC	3 cut(s)	351, 369, 576
MboI	GATC	3 cut(s)	349, 367, 574
MboII	GAAGA	3 cut(s)	74, 569, 572
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	2 cut(s)	149, 457
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	4 cut(s)	104, 182, 390, 569
MnlI	CCTC	5 cut(s)	136, 168, 193, 480, 634
Mox20I	TGGCCA	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	2 cut(s)	461, 540
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	621
MspI	CCGG	2 cut(s)	389, 393
NdeII	GATC	3 cut(s)	349, 367, 574
NlaIII	CATG	2 cut(s)	266, 274
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	3 cut(s)	23, 502, 598
PaeR7I	CTCGAG	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	199
Pfl23II	CGTACG	2 cut(s)	371, 603
PkrI	GCNGC	2 cut(s)	49, 468
PleI	GAGTC	4 cut(s)	103, 182, 390, 568
PpsI	GAGTC	4 cut(s)	103, 182, 390, 568
Ppu21I	YACGTR	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	590
PspLI	CGTACG	2 cut(s)	371, 603
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	570
PspXI	VCTCGAGB	1 cut(s)	509
RsaI	GTAC	2 cut(s)	373, 605
RsaNI	GTAC	2 cut(s)	372, 604
RseI	CAYNNNNRTG	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	461, 540
SatI	GCNGC	2 cut(s)	48, 467
Sau3AI	GATC	3 cut(s)	349, 367, 574
Sau96I	GGNCC	1 cut(s)	570
SchI	GAGTC	4 cut(s)	104, 182, 390, 569
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	7 cut(s)	106, 157, 307, 358, 495, 593, 605
SfaNI	GCATC	2 cut(s)	34, 203
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	570
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	2 cut(s)	149, 457
SsiI	CCGC	2 cut(s)	47, 474
SspMI	CTAG	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	6, 232
TaaI	ACNGT	2 cut(s)	67, 376
TaiI	ACGT	4 cut(s)	157, 495, 593, 605
TaqI	TCGA	4 cut(s)	93, 197, 399, 510
TasI	AATT	2 cut(s)	149, 457
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	461, 540
Tru9I	TTAA	2 cut(s)	461, 540
TseFI	GTSAC	3 cut(s)	23, 502, 598
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	3 cut(s)	23, 502, 598
VpaK11BI	GGWCC	1 cut(s)	570
XapI	RAATTY	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.