Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

7923245 .. 7923895

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCACACCCAAACTCTGTAATTGTAGTCGAGGTTTGTAGAGTGGCTCCAGTTACAGGCTCACCGGATTTTCCCACACTGGATCAGTCCCTCCCTCTAACTCTATTTGATCTACGCTGGCTAAGGTTTAAACCCGTAGAATGCCTCTACTTCTACGAAACATCTTCCCCTGATTCCATACTTCCCAAACTCAAAACCTCACTCTCTCTCACTCTCCAACACTTTCTTCCTCTCGCCGGAAAATTAAGTTGGCCCCTAAACTCTCTCAAACCCATTCTCAGTTATGTCCAAGGCGACACTGTTTCACTCACTATAGCCGAGTCCGATGCTGAAAATTTCAACCATCTTTCAAACAACGTCTTTGTTGAACCCAAAGGGTACCATCCTCTTGTTCCCAAATGGGATGTCTCTTACGAACGAGCCGCAGCCATGGCATTGCAAATCACTCTCTTTCCCAATCGTGGCTTTTCCATTGGAACAACAATGCACCATGCCATCCTTGATGGAAAAACTTCAACCTCGTTTGTGAAATCTTGGGCTCACATATGCAAAAATGAATCATCTCCAACTTCTTTGCTCCCGGAGCAGCTCAAACCGTTCTATGAAAGAGTTGTCATCCAGGACCGGAAGGGACTCGGAGAACTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

216

Amino Acids

24.22

Weight (kDa)

6.65

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	22 - 190	3.8e-23	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	378
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	334
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	3 cut(s)	56, 236, 461
AgsI	TTSAA	4 cut(s)	340, 351, 368, 516
AjnI	CCWGG	1 cut(s)	618
AjuI	GAANNNNNNNTTGG	4 cut(s)	210, 232, 242, 264
AluBI	AGCT	1 cut(s)	589
AluI	AGCT	1 cut(s)	589
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	425, 586
ApoI	RAATTY	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
Asp700I	GAANNNNTTC	1 cut(s)	511
Asp718I	GGTACC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	252, 622
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	541
BbvI	GCAGC	2 cut(s)	437, 598
BccI	CCATC	4 cut(s)	351, 390, 497, 503
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	1 cut(s)	620
BcnI	CCSGG	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	412
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	3 cut(s)	423, 426, 587
BlsI	GCNGC	3 cut(s)	424, 427, 588
Bme1390I	CCNGG	2 cut(s)	581, 620
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	2 cut(s)	252, 622
BmiI	GGNNCC	3 cut(s)	48, 254, 380
BmrFI	CCNGG	2 cut(s)	581, 620
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	289, 429
BsaWI	WCCGGW	2 cut(s)	64, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 236, 461
Bse1I	ACTGG	2 cut(s)	50, 84
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	289, 429
BseGI	GGATG	4 cut(s)	382, 409, 495, 615
BseLI	CCNNNNNNNGG	3 cut(s)	56, 236, 461
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	292
BseNI	ACTGG	2 cut(s)	50, 84
BseXI	GCAGC	2 cut(s)	437, 598
BshFI	GGCC	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	65, 237, 581, 625
BslFI	GGGAC	2 cut(s)	73, 645
BslI	CCNNNNNNNGG	3 cut(s)	56, 236, 461
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	2 cut(s)	73, 645
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	82, 109
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	48, 254, 380
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	50, 84
BssECI	CCNNGG	2 cut(s)	289, 429
BssMI	GATC	2 cut(s)	82, 109
BssT1I	CCWWGG	2 cut(s)	289, 429
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	301, 597
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	122, 278
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	4 cut(s)	382, 409, 495, 615
BstKTI	GATC	2 cut(s)	85, 112
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	82, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 583
BstNI	CCWGG	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	579, 618
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	437, 598
BsuRI	GGCC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	4 cut(s)	382, 409, 495, 615
BtsIMutI	CAGTG	2 cut(s)	77, 297
Cac8I	GCNNGC	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	252, 622
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	430, 491
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	122, 278
DpnI	GATC	2 cut(s)	84, 111
DpnII	GATC	2 cut(s)	82, 109
DraI	TTTAAA	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	289, 429
Eco24I	GRGCYC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	618
EcoT14I	CCWWGG	2 cut(s)	289, 429
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	289, 429
FaeI	CATG	2 cut(s)	433, 494
FaiI	YATR	8 cut(s)	179, 285, 314, 431, 492, 545, 547, 603
FaqI	GGGAC	2 cut(s)	73, 645
FatI	CATG	2 cut(s)	429, 490
FauNDI	CATATG	1 cut(s)	545
Fnu4HI	GCNGC	3 cut(s)	423, 426, 587
FokI	GGATG	4 cut(s)	369, 416, 482, 602
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	3 cut(s)	423, 426, 587
GluI	GCNGC	3 cut(s)	423, 426, 587
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	4 cut(s)	65, 237, 581, 625
Hin1II	CATG	2 cut(s)	433, 494
HinfI	GANTC	4 cut(s)	173, 320, 557, 633
HpaII	CCGG	4 cut(s)	65, 237, 581, 625
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	325, 638
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	2 cut(s)	301, 597
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	3 cut(s)	439, 487, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 583
HpyF3I	CTNAG	2 cut(s)	122, 278
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	433, 494
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	82, 109
LmnI	GCTCC	3 cut(s)	52, 582, 583
Lsp1109I	GCAGC	2 cut(s)	437, 598
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	84, 111
MboI	GATC	2 cut(s)	82, 109
MboII	GAAGA	2 cut(s)	156, 218
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	3 cut(s)	21, 242, 334
MlyI	GAGTC	2 cut(s)	329, 627
MmeI	TCCRAC	2 cut(s)	241, 590
MnlI	CCTC	8 cut(s)	25, 101, 105, 155, 208, 240, 396, 529
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	2 cut(s)	129, 245
MspI	CCGG	4 cut(s)	65, 237, 581, 625
MspR9I	CCNGG	2 cut(s)	581, 620
MssI	GTTTAAAC	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	2 cut(s)	431, 583
NciI	CCSGG	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	2 cut(s)	82, 109
NlaIII	CATG	2 cut(s)	433, 494
NlaIV	GGNNCC	3 cut(s)	48, 254, 380
NmeAIII	GCCGAG	1 cut(s)	343
PctI	GAATGC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	173, 557
PfoI	TCCNGGA	2 cut(s)	579, 618
PkrI	GCNGC	3 cut(s)	424, 427, 588
PleI	GAGTC	2 cut(s)	328, 627
PmeI	GTTTAAAC	1 cut(s)	130
PpsI	GAGTC	2 cut(s)	328, 627
Psp6I	CCWGG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	48, 254, 380
PspPI	GGNCC	2 cut(s)	252, 622
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	129, 245
SatI	GCNGC	3 cut(s)	423, 426, 587
Sau3AI	GATC	2 cut(s)	82, 109
Sau96I	GGNCC	2 cut(s)	252, 622
SchI	GAGTC	2 cut(s)	329, 627
ScrFI	CCNGG	2 cut(s)	581, 620
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	6 cut(s)	36, 128, 200, 360, 521, 591
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	622
Sse9I	AATT	3 cut(s)	21, 242, 334
SsiI	CCGC	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	579, 618
StyI	CCWWGG	2 cut(s)	289, 429
TaaI	ACNGT	2 cut(s)	301, 597
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	30
TasI	AATT	3 cut(s)	21, 242, 334
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	2 cut(s)	173, 557
Tru1I	TTAA	2 cut(s)	129, 245
Tru9I	TTAA	2 cut(s)	129, 245
TscAI	CASTG	2 cut(s)	84, 304
TseI	GCWGC	2 cut(s)	425, 586
TspDTI	ATGAA	2 cut(s)	570, 618
TspRI	CASTG	2 cut(s)	84, 304
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.