pycom17g07080

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000138
Physical Location & Seq
Reverse (-)
5110344 .. 5111207
864 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07080.1

Sequence Viewer

Length: 864 bp
ATGCCTTCATTCAACGCATCATATTTCTTCGATTCCATACTTTCGAAGCTCAAAACCTCACTTTCCGCCACCCTCCAACATTTTGTACCTCTAGCAGGAAACCTCACCTGGCTTATAGACTCCCCCGAAGCCCTTCTCAGTTATCTCAAAGGCAACGCAATTATGCTAACAATCGCTGAGTCTGATGCTAATTTCCACCGTCTAATTTCAAGCAACAACTTTGAAATTGAAGCCAAAGACTACCATCCTCTTGTACCCCAACTGGTAATGCCTCATGAAAAAGCTGCGGTGCTGGCATTGCAAATAACCGTCTTTTCCAAGGGCGGTTTTTCGATTGGATCAGCTATTCACCATGCTGCCTCTGATGGCTTATCTGCATTCTTGTTTTTCAAAATTTGGGGTCACCTATGCAAACATGAAGGAGGAGAAGAAGGAGGACCACTATCTTTGCCAAGTTACGATAGAAAGGTCATCAAGGACCCAGTCGGGCTCAAAGAAATCTACTCAAACGACTGGTTAAGATTGGGTGGTCCAAACAATAGAAGCTTACTGCATATGAAGGTTAAACGTCCAGGACACTCAATTCAAGGCACCTTCGAGTTCACACGCGCGAAAATCAAAACCTTAAGGCGATCAGTGATGAGAACTATGATGATAAAGAATAAAGAGCAAGCTGATCATTCAAAACTATTTCATTTATCAACATTTTCGCTAACATGCGCCTATACATGGGTTTGCTTAGTCAGGGTTGAGGAGACCAAAATAGAGAGAGTATTTTTCATCATTCTTGTGGACTACCGGTCACGCTTAGACTCTCCTATACATGGGTTTGTGGACATTTGGAGGGGTTCTTCGTCATCATAG

Protein Analysis

288

Amino Acids

32.31

Weight (kDa)

9.27

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 13 - 273 1.6e-24 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 590
AccII CGCG 2 cut(s) 609, 611
AciI CCGC 3 cut(s) 66, 287, 324
AclWI GGATC 1 cut(s) 346
AcsI RAATTY 1 cut(s) 393
AfaI GTAC 2 cut(s) 87, 255
AfiI CCNNNNNNNGG 3 cut(s) 95, 729, 824
AflII CTTAAG 1 cut(s) 625
AgeI ACCGGT 1 cut(s) 798
AgsI TTSAA 7 cut(s) 13, 210, 224, 230, 391, 587, 684
AhdI GACNNNNNGTC 1 cut(s) 799
AjnI CCWGG 2 cut(s) 107, 571
AluBI AGCT 5 cut(s) 49, 284, 344, 546, 674
AluI AGCT 5 cut(s) 49, 284, 344, 546, 674
Alw26I GTCTC 1 cut(s) 749
AlwI GGATC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 284, 356
ApoI RAATTY 1 cut(s) 393
AsiGI ACCGGT 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 611, 722
AspS9I GGNCC 3 cut(s) 437, 478, 530
AsuHPI GGTGA 3 cut(s) 97, 341, 395
AsuII TTCGAA 1 cut(s) 44
AvaII GGWCC 3 cut(s) 437, 478, 530
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 271, 343
BccI CCATC 2 cut(s) 252, 359
BciT130I CCWGG 2 cut(s) 109, 573
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 1 cut(s) 92
BfrI CTTAAG 1 cut(s) 625
BisI GCNGC 2 cut(s) 285, 357
BlsI GCNGC 2 cut(s) 286, 358
Bme1390I CCNGG 2 cut(s) 109, 573
Bme18I GGWCC 3 cut(s) 437, 478, 530
BmeRI GACNNNNNGTC 1 cut(s) 799
BmgT120I GGNCC 3 cut(s) 437, 478, 530
BmiI GGNNCC 2 cut(s) 480, 592
BmrFI CCNGG 2 cut(s) 109, 573
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 26, 175
BmuI ACTGGG 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 798
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 729, 824
Bse118I RCCGGY 1 cut(s) 798
Bse1I ACTGG 3 cut(s) 267, 482, 518
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 109, 573
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 3 cut(s) 95, 729, 824
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 151, 168
BseNI ACTGG 3 cut(s) 267, 482, 518
BseRI GAGGAG 2 cut(s) 438, 767
BseXI GCAGC 2 cut(s) 271, 343
Bsh1236I CGCG 2 cut(s) 609, 611
BshNI GGYRCC 1 cut(s) 590
BshTI ACCGGT 1 cut(s) 798
BsiSI CCGG 1 cut(s) 799
BslI CCNNNNNNNGG 3 cut(s) 95, 729, 824
BsmAI GTCTC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 377
Bso31I GGTCTC 1 cut(s) 749
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 3 cut(s) 338, 632, 676
BspACI CCGC 3 cut(s) 66, 287, 324
BspCNI CTCAG 2 cut(s) 150, 169
BspFNI CGCG 2 cut(s) 609, 611
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 480, 592
BspPI GGATC 1 cut(s) 346
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 590
BspTI CTTAAG 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 798
BsrI ACTGG 3 cut(s) 267, 482, 518
BssAI RCCGGY 1 cut(s) 798
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 3 cut(s) 338, 632, 676
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 109, 573
Bst4CI ACNGT 2 cut(s) 200, 310
BstAFI CTTAAG 1 cut(s) 625
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 294, 672
BstDEI CTNAG 4 cut(s) 137, 177, 739, 808
BstEII GGTNACC 1 cut(s) 401
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 2 cut(s) 609, 611
BstHHI GCGC 2 cut(s) 611, 722
BstKTI GATC 3 cut(s) 341, 635, 679
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 3 cut(s) 338, 632, 676
BstMWI GCNNNNNNNGC 2 cut(s) 293, 298
BstNI CCWGG 2 cut(s) 109, 573
BstNSI RCATGY 1 cut(s) 720
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 107, 571
BstUI CGCG 2 cut(s) 609, 611
BstV1I GCAGC 2 cut(s) 271, 343
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 2 cut(s) 294, 672
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 611, 722
Cfr10I RCCGGY 1 cut(s) 798
Cfr13I GGNCC 3 cut(s) 437, 478, 530
Csp6I GTAC 2 cut(s) 86, 254
CspAI ACCGGT 1 cut(s) 798
CspCI CAANNNNNGTGG 2 cut(s) 429, 464
CviAII CATG 6 cut(s) 275, 353, 416, 717, 729, 824
CviQI GTAC 2 cut(s) 86, 254
DdeI CTNAG 4 cut(s) 137, 177, 739, 808
DpnI GATC 3 cut(s) 340, 634, 678
DpnII GATC 3 cut(s) 338, 632, 676
DriI GACNNNNNGTC 1 cut(s) 799
Eam1105I GACNNNNNGTC 1 cut(s) 799
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 749
Eco47I GGWCC 3 cut(s) 437, 478, 530
Eco91I GGTNACC 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 107, 571
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 6 cut(s) 278, 356, 419, 720, 732, 827
FatI CATG 6 cut(s) 274, 352, 415, 716, 728, 823
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 2 cut(s) 285, 357
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 2 cut(s) 285, 357
FspBI CTAG 1 cut(s) 92
GlaI GCGC 2 cut(s) 610, 721
GluI GCNGC 2 cut(s) 285, 357
HapII CCGG 1 cut(s) 799
HhaI GCGC 2 cut(s) 611, 722
Hin1II CATG 6 cut(s) 278, 356, 419, 720, 732, 827
Hin6I GCGC 2 cut(s) 609, 720
HinP1I GCGC 2 cut(s) 609, 720
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 4 cut(s) 32, 119, 179, 812
HpaII CCGG 1 cut(s) 799
HphI GGTGA 3 cut(s) 97, 341, 395
Hpy166II GTNNAC 3 cut(s) 603, 793, 835
Hpy188I TCNGA 2 cut(s) 184, 364
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 3 cut(s) 603, 793, 835
HpyAV CCTTC 6 cut(s) 15, 143, 413, 425, 553, 604
HpyCH4III ACNGT 2 cut(s) 200, 310
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 4 cut(s) 301, 377, 411, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 298
HpyF3I CTNAG 4 cut(s) 137, 177, 739, 808
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 6 cut(s) 278, 356, 419, 720, 732, 827
HspAI GCGC 2 cut(s) 609, 720
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 3 cut(s) 338, 632, 676
Lsp1109I GCAGC 2 cut(s) 271, 343
LweI GCATC 2 cut(s) 26, 175
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 3 cut(s) 401, 455, 801
MalI GATC 3 cut(s) 340, 634, 678
MboI GATC 3 cut(s) 338, 632, 676
MboII GAAGA 3 cut(s) 19, 440, 843
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 6 cut(s) 159, 190, 204, 225, 393, 582
MlyI GAGTC 3 cut(s) 113, 188, 806
MmeI TCCRAC 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 3 cut(s) 518, 564, 626
MslI CAYNNNNRTG 1 cut(s) 788
MspCI CTTAAG 1 cut(s) 625
MspI CCGG 1 cut(s) 799
MspR9I CCNGG 2 cut(s) 109, 573
Mva1269I GAATGC 1 cut(s) 377
MvaI CCWGG 2 cut(s) 109, 573
MvnI CGCG 2 cut(s) 609, 611
MwoI GCNNNNNNNGC 2 cut(s) 293, 298
NdeI CATATG 1 cut(s) 555
NdeII GATC 3 cut(s) 338, 632, 676
NlaIII CATG 6 cut(s) 278, 356, 419, 720, 732, 827
NlaIV GGNNCC 2 cut(s) 480, 592
NmuCI GTSAC 2 cut(s) 401, 801
NspI RCATGY 1 cut(s) 720
NspV TTCGAA 1 cut(s) 44
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 32
PflFI GACNNNGTC 1 cut(s) 482
PfoI TCCNGGA 1 cut(s) 571
PinAI ACCGGT 1 cut(s) 798
PkrI GCNGC 2 cut(s) 286, 358
PleI GAGTC 3 cut(s) 113, 187, 806
PpsI GAGTC 3 cut(s) 113, 187, 806
PpuMI RGGWCCY 1 cut(s) 478
Psp5II RGGWCCY 1 cut(s) 478
Psp6I CCWGG 2 cut(s) 107, 571
PspEI GGTNACC 1 cut(s) 401
PspGI CCWGG 2 cut(s) 107, 571
PspN4I GGNNCC 2 cut(s) 480, 592
PspPI GGNCC 3 cut(s) 437, 478, 530
PspPPI RGGWCCY 1 cut(s) 478
PsyI GACNNNGTC 1 cut(s) 482
RsaI GTAC 2 cut(s) 87, 255
RsaNI GTAC 2 cut(s) 86, 254
RseI CAYNNNNRTG 1 cut(s) 788
SaqAI TTAA 3 cut(s) 518, 564, 626
SatI GCNGC 2 cut(s) 285, 357
Sau3AI GATC 3 cut(s) 338, 632, 676
Sau96I GGNCC 3 cut(s) 437, 478, 530
SchI GAGTC 3 cut(s) 113, 188, 806
ScrFI CCNGG 2 cut(s) 109, 573
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 2 cut(s) 26, 175
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 3 cut(s) 437, 478, 530
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 625
SmoI CTYRAG 1 cut(s) 625
Sse9I AATT 6 cut(s) 159, 190, 204, 225, 393, 582
SsiI CCGC 3 cut(s) 66, 287, 324
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 107, 571
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 200, 310
TaiI ACGT 1 cut(s) 571
TaqI TCGA 4 cut(s) 30, 44, 332, 597
TasI AATT 6 cut(s) 159, 190, 204, 225, 393, 582
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 3 cut(s) 518, 564, 626
Tru9I TTAA 3 cut(s) 518, 564, 626
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 401, 801
TseI GCWGC 2 cut(s) 284, 356
Tsp45I GTSAC 2 cut(s) 401, 801
TspDTI ATGAA 5 cut(s) 291, 432, 572, 683, 769
TspRI CASTG 1 cut(s) 642
Tth111I GACNNNGTC 1 cut(s) 482
Vha464I CTTAAG 1 cut(s) 625
VpaK11BI GGWCC 3 cut(s) 437, 478, 530
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.