Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003227.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

94021 .. 94551

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003227.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggcaaactcatcagtgaagaaagttgaggtctgcagggtggcaccaaaaccaggttcatctgagaaccagtcacttcctctaacgttcttcgacttattctggctccgttttcagcccgttgaacgcctctacttttaccaaacctcttccaccgattattccctactttccaaactcaaaacctccctgtctctcactctccaacacttcctacctctcgccggaaacctcacctggccccaagactccctcaaacccgttctaagctacgttcaagcagacgccgtttcactcaccgtagctgagtccgatgcagacttcgaccacctcataaacagtacctctcttgcagcccaagatttcagtcctcttgttcctcagttggatgtgactgacgagcgagccgccgccatggcgttgcaaatcactgtctatcccaaccgcggattctccatcggaacggccatgcaccacgcaatccttgatggcaaaacgtcgacctcgtttgtcaataattttgaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

176

Amino Acids

19.51

Weight (kDa)

5.22

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	1 cut(s)	447
AciI	CCGC	4 cut(s)	408, 411, 445, 447
AclI	AACGTT	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	3 cut(s)	53, 224, 446
AgsI	TTSAA	3 cut(s)	125, 278, 524
AjnI	CCWGG	2 cut(s)	52, 236
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 434, 466
AluBI	AGCT	2 cut(s)	270, 305
AluI	AGCT	2 cut(s)	270, 305
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	2 cut(s)	239, 465
ApeKI	GCWGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	226, 289
BanI	GGYRCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	2 cut(s)	464, 482
BceAI	ACGGC	2 cut(s)	272, 480
BciT130I	CCWGG	2 cut(s)	54, 238
BcoDI	GTCTC	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	354, 408, 411
BlsI	GCNGC	3 cut(s)	355, 409, 412
Bme1390I	CCNGG	2 cut(s)	54, 238
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	3 cut(s)	45, 107, 242
BmrFI	CCNGG	2 cut(s)	54, 238
BmsI	GCATC	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	414, 445
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 224, 446
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	54, 238
BseDI	CCNNGG	2 cut(s)	414, 445
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	3 cut(s)	53, 224, 446
BseMII	CTCAG	3 cut(s)	54, 297, 395
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	241, 467
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	53, 224, 446
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	241, 467
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	4 cut(s)	408, 411, 445, 447
BspANI	GGCC	2 cut(s)	241, 467
BspCNI	CTCAG	3 cut(s)	55, 298, 394
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	3 cut(s)	45, 107, 242
BspMAI	CTGCAG	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	414, 445
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	54, 238
Bst4CI	ACNGT	3 cut(s)	301, 341, 433
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	4 cut(s)	63, 266, 306, 381
BstDSI	CCRYGG	2 cut(s)	414, 445
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	447
BstMAI	GTCTC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	54, 238
BstSCI	CCNGG	2 cut(s)	52, 236
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	241, 467
BtgI	CCRYGG	2 cut(s)	414, 445
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	21, 429
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	240
Cfr42I	CCGCGG	1 cut(s)	448
CseI	GACGC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	415, 469
CviJI	RGCY	8 cut(s)	106, 118, 241, 270, 305, 356, 407, 467
CviKI_1	RGCY	8 cut(s)	106, 118, 241, 270, 305, 356, 407, 467
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	4 cut(s)	63, 266, 306, 381
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	52, 236
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	2 cut(s)	418, 472
FaiI	YATR	3 cut(s)	335, 416, 470
FatI	CATG	2 cut(s)	414, 468
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	3 cut(s)	354, 408, 411
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	354, 408, 411
GluI	GCNGC	3 cut(s)	354, 408, 411
HaeIII	GGCC	2 cut(s)	241, 467
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	418, 472
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	3 cut(s)	248, 308, 450
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	226, 289
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	3 cut(s)	64, 313, 461
Hpy8I	GTNNAC	1 cut(s)	501
Hpy99I	CGWCG	1 cut(s)	502
HpyCH4III	ACNGT	3 cut(s)	301, 341, 433
HpyCH4IV	ACGT	3 cut(s)	86, 273, 497
HpyCH4V	TGCA	5 cut(s)	36, 317, 353, 424, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	4 cut(s)	63, 266, 306, 381
HpySE526I	ACGT	3 cut(s)	86, 273, 497
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	418, 472
KspI	CCGCGG	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	9 cut(s)	22, 39, 66, 83, 88, 203, 223, 238, 250
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	304
MabI	ACCWGGT	1 cut(s)	52
MaeII	ACGT	3 cut(s)	86, 273, 497
MaeIII	GTNAC	2 cut(s)	72, 391
MboII	GAAGA	3 cut(s)	31, 82, 141
MluCI	AATT	1 cut(s)	517
MlyI	GAGTC	2 cut(s)	242, 317
MmeI	TCCRAC	2 cut(s)	229, 366
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	54, 238
MvaI	CCWGG	2 cut(s)	54, 238
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	416
NcoI	CCATGG	1 cut(s)	414
NlaIII	CATG	2 cut(s)	418, 472
NlaIV	GGNNCC	3 cut(s)	45, 107, 242
NmuCI	GTSAC	2 cut(s)	72, 391
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	355, 409, 412
PleI	GAGTC	2 cut(s)	242, 316
PpsI	GAGTC	2 cut(s)	242, 316
Psp1406I	AACGTT	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	52, 236
PspGI	CCWGG	2 cut(s)	52, 236
PspN4I	GGNNCC	3 cut(s)	45, 107, 242
PspPI	GGNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SacII	CCGCGG	1 cut(s)	448
SalI	GTCGAC	1 cut(s)	499
SatI	GCNGC	3 cut(s)	354, 408, 411
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	2 cut(s)	242, 317
ScrFI	CCNGG	2 cut(s)	54, 238
SexAI	ACCWGGT	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	34
Sfr303I	CCGCGG	1 cut(s)	448
SgrBI	CCGCGG	1 cut(s)	448
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	4 cut(s)	408, 411, 445, 447
StyD4I	CCNGG	2 cut(s)	52, 236
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	301, 341, 433
TaiI	ACGT	3 cut(s)	89, 276, 500
TaqI	TCGA	3 cut(s)	93, 324, 500
TasI	AATT	1 cut(s)	517
TauI	GCSGC	2 cut(s)	410, 413
TfiI	GAWTC	1 cut(s)	450
TscAI	CASTG	2 cut(s)	21, 436
TseFI	GTSAC	2 cut(s)	72, 391
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	72, 391
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	21, 436
XmiI	GTMKAC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.