Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009268.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Forward (+)

27464 .. 28168

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009268.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggcgcaaccaagctcggtgaaactggtggagatttgcagggtggctccaaaaccaggcgcactagatctgttgtcccttcctcttacctactttgactcgctctggctaaggtttccacccgtacaacgcctttacttcaatgaattaacatcttcttcctattctaattcttccactagtgctgattctgtagtacttgcctatctcaaaacctcgctctctcacactctcaaacactttgtacctctcgccggaaacctaacttggcctcaagactcccacacaccccttctcagctatgtccaaggcggcaccgtttcactcacagtagctgagtccgatgctgataatttcgaccacctttcgagcaacaacgtctttctcgaatccaaagcttaccatccacttgttccccaattggagtcgtctcatgaacgaactgcagccattgcattgcaaataaccctatttcctggccgtggcttcgcctttggaagtttggaacagccatgcaccatgcaatcctcgatggcaaaacatacatctcgttcgttaagtcgtgggctcatgcatgcagcaaacaaattgaaattggcttgtccattggatcagatatttcgttaccagagcagctcaagccattatatgatagaacggtcatctatgatccgactgggctcggactcgaatccatctatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

234

Amino Acids

25.75

Weight (kDa)

7.8

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	2 cut(s)	618, 664
AcoI	YGGCCR	1 cut(s)	478
AfaI	GTAC	3 cut(s)	126, 198, 246
AfiI	CCNNNNNNNGG	3 cut(s)	56, 254, 482
AgsI	TTSAA	2 cut(s)	142, 592
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	55, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	5 cut(s)	15, 300, 335, 398, 636
AluI	AGCT	5 cut(s)	15, 300, 335, 398, 636
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	618, 664
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	269, 478
ApeKI	GCWGC	3 cut(s)	446, 578, 633
AspLEI	GCGC	2 cut(s)	7, 62
AsuHPI	GGTGA	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	570, 683
BbvI	GCAGC	3 cut(s)	458, 590, 645
BccI	CCATC	3 cut(s)	411, 526, 703
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	57, 477
BcoDI	GTCTC	1 cut(s)	435
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	65, 180
BfmI	CTRYAG	2 cut(s)	192, 444
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	4 cut(s)	313, 447, 579, 634
BlsI	GCNGC	4 cut(s)	314, 448, 580, 635
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	57, 477
BmiI	GGNNCC	2 cut(s)	48, 316
BmrFI	CCNGG	2 cut(s)	57, 477
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	258, 622
BsaJI	CCNNGG	2 cut(s)	307, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 254, 482
Bse1I	ACTGG	2 cut(s)	30, 681
Bse3DI	GCAATG	2 cut(s)	450, 455
BseBI	CCWGG	2 cut(s)	57, 477
BseDI	CCNNGG	2 cut(s)	307, 481
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	56, 254, 482
BseMI	GCAATG	2 cut(s)	450, 455
BseMII	CTCAG	2 cut(s)	310, 327
BseNI	ACTGG	2 cut(s)	30, 681
BseXI	GCAGC	3 cut(s)	458, 590, 645
BshFI	GGCC	2 cut(s)	271, 480
BshNI	GGYRCC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	56, 254, 482
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	271, 480
Bsp1286I	GDGCHC	2 cut(s)	570, 683
Bsp143I	GATC	3 cut(s)	67, 610, 669
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	2 cut(s)	271, 480
BspCNI	CTCAG	2 cut(s)	309, 328
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	48, 316
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	618, 664
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	450, 455
BsrI	ACTGG	2 cut(s)	30, 681
BssECI	CCNNGG	2 cut(s)	307, 481
BssMI	GATC	3 cut(s)	67, 610, 669
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	57, 477
Bst4CI	ACNGT	3 cut(s)	319, 331, 660
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	110, 296, 336
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	2 cut(s)	7, 62
BstKTI	GATC	3 cut(s)	70, 613, 672
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	3 cut(s)	67, 610, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 639
BstNI	CCWGG	2 cut(s)	57, 477
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	55, 475
BstSFI	CTRYAG	2 cut(s)	192, 444
BstV1I	GCAGC	3 cut(s)	458, 590, 645
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	271, 480
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	2 cut(s)	7, 62
Csp6I	GTAC	3 cut(s)	125, 197, 245
CviAII	CATG	5 cut(s)	434, 513, 520, 571, 575
CviQI	GTAC	3 cut(s)	125, 197, 245
DdeI	CTNAG	3 cut(s)	110, 296, 336
DpnI	GATC	3 cut(s)	69, 612, 671
DpnII	GATC	3 cut(s)	67, 610, 669
EaeI	YGGCCR	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	570, 683
EcoRII	CCWGG	2 cut(s)	55, 475
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	576
EcoT38I	GRGCYC	2 cut(s)	570, 683
ErhI	CCWWGG	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	5 cut(s)	437, 516, 523, 574, 578
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	5 cut(s)	433, 512, 519, 570, 574
Fnu4HI	GCNGC	4 cut(s)	313, 447, 579, 634
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	2 cut(s)	570, 683
Fsp4HI	GCNGC	4 cut(s)	313, 447, 579, 634
FspBI	CTAG	2 cut(s)	65, 180
GlaI	GCGC	2 cut(s)	6, 61
GluI	GCNGC	4 cut(s)	313, 447, 579, 634
HaeIII	GGCC	2 cut(s)	271, 480
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	2 cut(s)	7, 62
Hin1II	CATG	5 cut(s)	437, 516, 523, 574, 578
Hin6I	GCGC	2 cut(s)	5, 60
HinP1I	GCGC	2 cut(s)	5, 60
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	8 cut(s)	98, 188, 278, 338, 389, 425, 686, 691
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	343, 615, 674, 685
Hpy188III	TCNNGA	3 cut(s)	275, 386, 434
HpyAV	CCTTC	2 cut(s)	89, 302
HpyCH4III	ACNGT	3 cut(s)	319, 331, 660
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	8 cut(s)	39, 446, 455, 460, 516, 523, 574, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 639
HpyF3I	CTNAG	3 cut(s)	110, 296, 336
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	5 cut(s)	437, 516, 523, 574, 578
HspAI	GCGC	2 cut(s)	5, 60
Kzo9I	GATC	3 cut(s)	67, 610, 669
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	458, 590, 645
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	65, 180
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	3 cut(s)	69, 612, 671
MboI	GATC	3 cut(s)	67, 610, 669
MboII	GAAGA	3 cut(s)	147, 150, 165
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	2 cut(s)	570, 683
MluCI	AATT	6 cut(s)	146, 169, 352, 419, 587, 593
MlyI	GAGTC	5 cut(s)	92, 272, 347, 434, 680
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	5 cut(s)	93, 226, 258, 282, 538
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	3 cut(s)	149, 557, 703
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	57, 477
MunI	CAATTG	1 cut(s)	419
MvaI	CCWGG	2 cut(s)	57, 477
MwoI	GCNNNNNNNGC	2 cut(s)	452, 639
NdeII	GATC	3 cut(s)	67, 610, 669
NlaIII	CATG	5 cut(s)	437, 516, 523, 574, 578
NlaIV	GGNNCC	2 cut(s)	48, 316
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	578
PaeI	GCATGC	1 cut(s)	578
PagI	TCATGA	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	188, 389, 691
PkrI	GCNGC	4 cut(s)	314, 448, 580, 635
PleI	GAGTC	5 cut(s)	92, 272, 346, 433, 680
PpsI	GAGTC	5 cut(s)	92, 272, 346, 433, 680
Psp6I	CCWGG	2 cut(s)	55, 475
PspGI	CCWGG	2 cut(s)	55, 475
PspN4I	GGNNCC	2 cut(s)	48, 316
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	3 cut(s)	126, 198, 246
RsaNI	GTAC	3 cut(s)	125, 197, 245
SaqAI	TTAA	3 cut(s)	149, 557, 703
SatI	GCNGC	4 cut(s)	313, 447, 579, 634
Sau3AI	GATC	3 cut(s)	67, 610, 669
ScaI	AGTACT	1 cut(s)	198
SchI	GAGTC	5 cut(s)	92, 272, 347, 434, 680
ScrFI	CCNGG	2 cut(s)	57, 477
SduI	GDGCHC	2 cut(s)	570, 683
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	192, 444
SmlI	CTYRAG	2 cut(s)	273, 637
SmoI	CTYRAG	2 cut(s)	273, 637
SpeI	ACTAGT	1 cut(s)	179
SphI	GCATGC	1 cut(s)	578
Sse9I	AATT	6 cut(s)	146, 169, 352, 419, 587, 593
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	65, 180
StyD4I	CCNGG	2 cut(s)	55, 475
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	319, 331, 660
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	5 cut(s)	357, 368, 387, 530, 689
TasI	AATT	6 cut(s)	146, 169, 352, 419, 587, 593
TatI	WGTACW	1 cut(s)	196
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	188, 389, 691
Tru1I	TTAA	3 cut(s)	149, 557, 703
Tru9I	TTAA	3 cut(s)	149, 557, 703
TseI	GCWGC	3 cut(s)	446, 578, 633
TspDTI	ATGAA	2 cut(s)	159, 450
XceI	RCATGY	1 cut(s)	578
XspI	CTAG	2 cut(s)	65, 180
ZrmI	AGTACT	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.