Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

7809148 .. 7810307

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCACAGGCAAACTCAAACTCACTGAAAGTAGTTGAGGTTTGCAGAGTAGCTCCACAACCAATCTCACCAGACTCACCCGTACCAGATCATTTCTCCCTTCCTCTAACCTTCTTTGACATACACTGGCTAAGATTGAAACCCATTCAAAGGATTTTCTTCTATGAAACATCTTCCACTGATACCATACTTCCCAAACTCAAAACCTCAATATCTCTCACCCTCCAACACTTCCTCCCACTAGCAGGAACCTTAACTTGGCCCCAAGACTCCTACAAACCCATTCTCAACTATGTTTTAGGTGACACCGTTGCACTCACAATAGCCGAGTCTGAGGCTGATTTCCACCATCTTTCAAGCAATGAATATCTCCAATCCAAAGAGTACCACCCTCTTGTTCCCCAATTGGCAGTGACTGGTGAACGAGCTGCGGTGTTGGCAGTGCAAATCACTGTCTTTCCCAAGCATGGGTTTTCCATTGGAACCTGCATGCACCATGCCGTGCTTGATGGCAAATCTTCAACCATGTTTTTCAAATCCTGGGCTCACATATGCAAACATGGTTCAGCTGTTTCGTTGCCAGATCAGCTGAAACCATGTTACAGTGACAGACAGGCCATCAAGGACCCGATGGGGCTCGAAGCAATCTACTCGAATGACTGGTTGAGATTTGGGGGTCTAACAAGAGAAGCTTACTTGGATTCTGATTCAGCTCATCTGTCATCATTTTCTCTAACATGTGGCTATACATGGGCTTGCTTAGTCAAGGCAGAAGAAATAAAATCTGACGGTTCTGACCAAGTATGGATAGTCTTCAGTGTGGACTGTAGGTCTCGCTTAGACCCTCCAGTTTCAGCAACATACTTTGGGAACTGCATTATAGGTCATATAGCAGTTGCAGAAACAAAAGGACTCTTGGGAGAAGATGGGTGGAGTGTAGCTGTGAATGCAATTAGTGAAAGTATAAAGGCTTTGGATGGAAGTGGGGGACTTTTCAATGGGGCAGAGACTTGGGTTTCAAAGATGTGCAATGCGAAGGGGACTGAGAGATTTTTTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

353

Amino Acids

38.92

Weight (kDa)

5.99

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	20 - 192	1.7e-25	Transferase family
Transferase	PF02458	230 - 326	6.5e-10	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
AciI	CCGC	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	799
AfaI	GTAC	2 cut(s)	84, 386
AfiI	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
AflIII	ACRYGT	1 cut(s)	737
AgsI	TTSAA	7 cut(s)	139, 149, 357, 522, 535, 997, 1020
AhdI	GACNNNNNGTC	1 cut(s)	829
AjnI	CCWGG	1 cut(s)	539
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	7 cut(s)	53, 428, 569, 589, 692, 713, 941
AluI	AGCT	7 cut(s)	53, 428, 569, 589, 692, 713, 941
Alw26I	GTCTC	2 cut(s)	837, 1001
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	260, 615
ApeKI	GCWGC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	261, 625
AsuHPI	GGTGA	5 cut(s)	60, 69, 211, 314, 431
AvaII	GGWCC	1 cut(s)	625
BanII	GRGCYC	2 cut(s)	547, 639
BbsI	GAAGAC	1 cut(s)	805
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	6 cut(s)	357, 503, 625, 626, 920, 971
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	633, 667
BciT130I	CCWGG	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	837, 1001
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	826
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	625
BmeRI	GACNNNNNGTC	1 cut(s)	829
BmgT120I	GGNCC	2 cut(s)	261, 625
BmiI	GGNNCC	4 cut(s)	250, 263, 484, 627
BmrFI	CCNGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	805
BpmI	CTGGAG	1 cut(s)	831
BsaI	GGTCTC	1 cut(s)	837
BsaJI	CCNNGG	1 cut(s)	540
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
Bse1I	ACTGG	4 cut(s)	131, 421, 665, 848
Bse3DI	GCAATG	2 cut(s)	367, 1036
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	1 cut(s)	982
BseLI	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
BseMI	GCAATG	2 cut(s)	367, 1036
BseMII	CTCAG	2 cut(s)	324, 1035
BseNI	ACTGG	4 cut(s)	131, 421, 665, 848
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	2 cut(s)	262, 617
BslFI	GGGAC	2 cut(s)	1002, 1054
BslI	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
BsmAI	GTCTC	2 cut(s)	837, 1001
BsmFI	GGGAC	2 cut(s)	1002, 1054
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	2 cut(s)	262, 617
Bso31I	GGTCTC	1 cut(s)	837
Bsp1286I	GDGCHC	2 cut(s)	547, 639
Bsp143I	GATC	2 cut(s)	88, 583
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	2 cut(s)	262, 617
BspCNI	CTCAG	2 cut(s)	325, 1036
BspLI	GGNNCC	4 cut(s)	250, 263, 484, 627
BspMI	ACCTGC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	837
BsrDI	GCAATG	2 cut(s)	367, 1036
BsrI	ACTGG	4 cut(s)	131, 421, 665, 848
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	2 cut(s)	88, 583
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	5 cut(s)	310, 454, 605, 791, 827
BstC8I	GCNNGC	2 cut(s)	491, 757
BstDEI	CTNAG	5 cut(s)	131, 333, 760, 838, 1044
BstF5I	GGATG	1 cut(s)	982
BstKTI	GATC	2 cut(s)	91, 586
BstMAI	GTCTC	2 cut(s)	837, 1001
BstMBI	GATC	2 cut(s)	88, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 586, 947
BstNI	CCWGG	1 cut(s)	541
BstNSI	RCATGY	2 cut(s)	493, 741
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	826
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	262, 617
BtsCI	GGATG	1 cut(s)	982
BtsI	GCAGTG	2 cut(s)	417, 447
BtsIMutI	CAGTG	8 cut(s)	23, 124, 177, 417, 447, 450, 610, 823
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	2 cut(s)	491, 757
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	261, 625
Csp6I	GTAC	2 cut(s)	83, 385
CviAII	CATG	8 cut(s)	467, 490, 497, 526, 560, 597, 738, 750
CviQI	GTAC	2 cut(s)	83, 385
DdeI	CTNAG	5 cut(s)	131, 333, 760, 838, 1044
DpnI	GATC	2 cut(s)	90, 585
DpnII	GATC	2 cut(s)	88, 583
DriI	GACNNNNNGTC	1 cut(s)	829
Eam1105I	GACNNNNNGTC	1 cut(s)	829
Eco24I	GRGCYC	2 cut(s)	547, 639
Eco31I	GGTCTC	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	799
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	547, 639
FaeI	CATG	8 cut(s)	470, 493, 500, 529, 563, 600, 741, 753
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FaqI	GGGAC	2 cut(s)	1002, 1054
FatI	CATG	8 cut(s)	466, 489, 496, 525, 559, 596, 737, 749
FauNDI	CATATG	1 cut(s)	551
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	989
FriOI	GRGCYC	2 cut(s)	547, 639
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	262, 617
Hin1II	CATG	8 cut(s)	470, 493, 500, 529, 563, 600, 741, 753
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	6 cut(s)	74, 269, 329, 701, 707, 912
HphI	GGTGA	5 cut(s)	60, 69, 211, 314, 431
Hpy166II	GTNNAC	2 cut(s)	422, 823
Hpy188I	TCNGA	4 cut(s)	334, 706, 787, 796
Hpy8I	GTNNAC	2 cut(s)	422, 823
HpyAV	CCTTC	3 cut(s)	110, 121, 1030
HpyCH4III	ACNGT	5 cut(s)	310, 454, 605, 791, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 586, 947
HpyF3I	CTNAG	5 cut(s)	131, 333, 760, 838, 1044
Hsp92II	CATG	8 cut(s)	470, 493, 500, 529, 563, 600, 741, 753
Kzo9I	GATC	2 cut(s)	88, 583
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	4 cut(s)	302, 412, 599, 605
MalI	GATC	2 cut(s)	90, 585
MboI	GATC	2 cut(s)	88, 583
MboII	GAAGA	6 cut(s)	151, 165, 510, 785, 805, 935
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	547, 639
MluCI	AATT	2 cut(s)	404, 951
MlyI	GAGTC	4 cut(s)	68, 263, 338, 906
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	8 cut(s)	31, 114, 217, 233, 245, 328, 402, 855
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	569, 589
MspR9I	CCNGG	1 cut(s)	541
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	437, 586, 947
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	2 cut(s)	88, 583
NlaIII	CATG	8 cut(s)	470, 493, 500, 529, 563, 600, 741, 753
NlaIV	GGNNCC	4 cut(s)	250, 263, 484, 627
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	302, 412, 605
NspI	RCATGY	2 cut(s)	493, 741
PaeI	GCATGC	1 cut(s)	493
PciI	ACATGT	1 cut(s)	737
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	2 cut(s)	701, 707
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	4 cut(s)	68, 263, 337, 906
PpsI	GAGTC	4 cut(s)	68, 263, 337, 906
PpuMI	RGGWCCY	1 cut(s)	625
PscI	ACATGT	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	250, 263, 484, 627
PspPI	GGNCC	2 cut(s)	261, 625
PspPPI	RGGWCCY	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	2 cut(s)	569, 589
RsaI	GTAC	2 cut(s)	84, 386
RsaNI	GTAC	2 cut(s)	83, 385
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	88, 583
Sau96I	GGNCC	2 cut(s)	261, 625
SchI	GAGTC	4 cut(s)	68, 263, 338, 906
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	2 cut(s)	547, 639
SfcI	CTRYAG	1 cut(s)	826
SinI	GGWCC	1 cut(s)	625
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	2 cut(s)	404, 951
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	539
TaaI	ACNGT	5 cut(s)	310, 454, 605, 791, 827
TaqI	TCGA	2 cut(s)	639, 653
TasI	AATT	2 cut(s)	404, 951
TfiI	GAWTC	2 cut(s)	701, 707
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	8 cut(s)	30, 131, 184, 417, 447, 457, 610, 823
TseFI	GTSAC	3 cut(s)	302, 412, 605
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	3 cut(s)	302, 412, 605
TspDTI	ATGAA	2 cut(s)	180, 378
TspRI	CASTG	8 cut(s)	30, 131, 184, 417, 447, 457, 610, 823
VpaK11BI	GGWCC	1 cut(s)	625
XceI	RCATGY	2 cut(s)	493, 741
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.