Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Forward (+)

4777136 .. 4777772

Gene Structure 637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGCAACTAAACTCGGTGAAAATGGTGGAGATTTGCAGGGTGGCTCCAAAACCAGGCGTACCAGATCTGTTGTCCCTTCCTCTTACCTACTTTGACTCGCTCTGGCTAAGGTTTCCACCCGTACAACGCCTTTACTTCTATGAATTAACATCTTCTTCCTCTTCTAATTCTTCCACAAGTGCTGATTCTGTAGTACTTGCCTATCTGAAAACCTCGCTCTCTCTCACTCTCAAACACTTTGCACCTCTCACCGGAAACCTAACTTGGCCTCAAGACTCCCACACACCCCTTCTCAGCTATGTCCAAGGCGACACTGTTTCACTCACAGTAGCTGAGTCCGGTCGACCACCTTTCGAGCAACAACCCATTGCATTGCAAATAACCCTATTTCCTGGCCATGGCTTCGCCATTGGAACAGCCATGCACCATGCAATCCTCGACAGAAAAACATACATCTCATTTGTTAAGTCGTGGGCTAATGCATGCAGTAAACAAATTGAAATTGGCTTGTCCATATATTGGATCAGATATTTCGTTACTGGAGCAGCTCAAGCCATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

188

Amino Acids

20.78

Weight (kDa)

8.55

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	13 - 98	1.4e-06	Transferase family
Transferase	PF02458	120 - 179	7.6e-07	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccI	GTMKAC	1 cut(s)	346
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	1 cut(s)	397
AfaI	GTAC	3 cut(s)	63, 126, 198
AfiI	CCNNNNNNNGG	4 cut(s)	56, 254, 401, 522
AgsI	TTSAA	1 cut(s)	503
AjnI	CCWGG	2 cut(s)	55, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	3 cut(s)	300, 335, 551
AluI	AGCT	3 cut(s)	300, 335, 551
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	269, 397
ApeKI	GCWGC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	31, 244
BalI	TGGCCA	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	560
BciT130I	CCWGG	2 cut(s)	57, 396
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	57, 396
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	57, 396
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	258, 537
BsaJI	CCNNGG	2 cut(s)	307, 400
BsaWI	WCCGGW	2 cut(s)	254, 341
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 254, 401, 522
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	369, 374
BseBI	CCWGG	2 cut(s)	57, 396
BseDI	CCNNGG	2 cut(s)	307, 400
BseLI	CCNNNNNNNGG	4 cut(s)	56, 254, 401, 522
BseMI	GCAATG	2 cut(s)	369, 374
BseMII	CTCAG	2 cut(s)	310, 327
BseNI	ACTGG	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	560
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	2 cut(s)	271, 399
BsiEI	CGRYCG	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	255, 342
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	4 cut(s)	56, 254, 401, 522
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	271, 399
Bsp143I	GATC	2 cut(s)	67, 525
Bsp19I	CCATGG	1 cut(s)	400
BspANI	GGCC	2 cut(s)	271, 399
BspCNI	CTCAG	2 cut(s)	309, 328
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	533
BsrDI	GCAATG	2 cut(s)	369, 374
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	307, 400
BssMI	GATC	2 cut(s)	67, 525
BssT1I	CCWWGG	2 cut(s)	307, 400
Bst2UI	CCWGG	2 cut(s)	57, 396
Bst4CI	ACNGT	2 cut(s)	319, 331
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	3 cut(s)	110, 296, 336
BstDSI	CCRYGG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	70, 528
BstMBI	GATC	2 cut(s)	67, 525
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	2 cut(s)	57, 396
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	55, 394
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	271, 399
BtgI	CCRYGG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	487
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	3 cut(s)	62, 125, 197
CviAII	CATG	4 cut(s)	401, 424, 431, 486
CviQI	GTAC	3 cut(s)	62, 125, 197
DdeI	CTNAG	3 cut(s)	110, 296, 336
DpnI	GATC	2 cut(s)	69, 527
DpnII	GATC	2 cut(s)	67, 525
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	307, 400
EcoRII	CCWGG	2 cut(s)	55, 394
EcoT14I	CCWWGG	2 cut(s)	307, 400
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	307, 400
FaeI	CATG	4 cut(s)	404, 427, 434, 489
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	4 cut(s)	400, 423, 430, 485
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	549
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	271, 399
HapII	CCGG	2 cut(s)	255, 342
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	404, 427, 434, 489
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	4 cut(s)	98, 188, 278, 338
HpaII	CCGG	2 cut(s)	255, 342
HphI	GGTGA	2 cut(s)	31, 244
Hpy166II	GTNNAC	2 cut(s)	347, 494
Hpy188I	TCNGA	2 cut(s)	210, 530
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	347, 494
HpyAV	CCTTC	2 cut(s)	89, 302
HpyCH4III	ACNGT	2 cut(s)	319, 331
HpyCH4V	TGCA	8 cut(s)	39, 245, 374, 379, 427, 434, 485, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	3 cut(s)	110, 296, 336
Hsp92II	CATG	4 cut(s)	404, 427, 434, 489
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	67, 525
LmnI	GCTCC	2 cut(s)	52, 545
Lsp1109I	GCAGC	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	2 cut(s)	69, 527
MboI	GATC	2 cut(s)	67, 525
MboII	GAAGA	4 cut(s)	147, 150, 156, 165
MflI	RGATCY	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	4 cut(s)	146, 169, 498, 504
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	3 cut(s)	92, 272, 347
MnlI	CCTC	6 cut(s)	93, 172, 226, 258, 282, 449
Mox20I	TGGCCA	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	2 cut(s)	149, 468
Msp20I	TGGCCA	1 cut(s)	399
MspI	CCGG	2 cut(s)	255, 342
MspR9I	CCNGG	2 cut(s)	57, 396
MvaI	CCWGG	2 cut(s)	57, 396
MwoI	GCNNNNNNNGC	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	2 cut(s)	67, 525
NlaIII	CATG	4 cut(s)	404, 427, 434, 489
NlaIV	GGNNCC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	489
PaeI	GCATGC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	3 cut(s)	92, 272, 346
PpsI	GAGTC	3 cut(s)	92, 272, 346
Psp6I	CCWGG	2 cut(s)	55, 394
PspGI	CCWGG	2 cut(s)	55, 394
PspN4I	GGNNCC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	3 cut(s)	63, 126, 198
RsaNI	GTAC	3 cut(s)	62, 125, 197
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	149, 468
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	2 cut(s)	67, 525
ScaI	AGTACT	1 cut(s)	198
SchI	GAGTC	3 cut(s)	92, 272, 347
ScrFI	CCNGG	2 cut(s)	57, 396
SetI	ASST	9 cut(s)	92, 116, 218, 250, 264, 302, 337, 355, 553
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	273, 552
SmoI	CTYRAG	2 cut(s)	273, 552
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	4 cut(s)	146, 169, 498, 504
StyD4I	CCNGG	2 cut(s)	55, 394
StyI	CCWWGG	2 cut(s)	307, 400
TaaI	ACNGT	2 cut(s)	319, 331
TaqI	TCGA	3 cut(s)	346, 357, 441
TasI	AATT	4 cut(s)	146, 169, 498, 504
TatI	WGTACW	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	149, 468
Tru9I	TTAA	2 cut(s)	149, 468
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	522
XceI	RCATGY	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	346
ZrmI	AGTACT	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.