Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243107.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 776

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 776 bp

caaactcaaactcaaactcactcgtaaaagtggtggaagtttgcagggttgctccaaacccaggctcaccggactcagccacaccagattcccttcctctaaccttgttcgatttacgttggttaaggtttgcaccggtgcagcgcctgtacttttatgaaatatcttctactgactccatacttcccaaactcaaagcctccctctctctcacactccaacactttctgcccctcgctggaaacctcacttggccccaagactcactcaaacccattctctgttatgccaaaggtgacagtgtttcacttacagtagctgaatctgctgctaattttgaccatctttcaagcaagtacgacttgcttggagtccaagactaccatcatcttgtaccccagttggaagtatctcatgaacgatctgcagtaatggcattgcaaatcactgtctttcccaaccaaggcttttccattggaacatcgatgcaccatgccgtcttggatggtaaaacttcaacctccttccttaaatcatgggctcacatatgcaaacacgaagaactgggatcttcatctagtttgttaccagatgagctaaagccattttatgacagaatggtcatccaagacttggcagagcttggggcgctctactcgaaccaataccaaaacatgaagggccccaacaatagaagcttgaaggtttggaattttcaagctccaccagagtcaattcgaggcaccttcaaagtctgtcacgcaaaaatacaaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

258

Amino Acids

28.71

Weight (kDa)

7.28

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	742
AccB7I	CCANNNNNTGG	1 cut(s)	633
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	711
AfaI	GTAC	3 cut(s)	151, 358, 395
AfiI	CCNNNNNNNGG	4 cut(s)	61, 238, 463, 633
AgeI	ACCGGT	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	350, 518, 702, 718, 750
AjnI	CCWGG	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	5 cut(s)	319, 597, 642, 698, 721
AluI	AGCT	5 cut(s)	319, 597, 642, 698, 721
AlwI	GGATC	1 cut(s)	576
AlwNI	CAGNNNCTG	2 cut(s)	147, 319
AoxI	GGCC	2 cut(s)	253, 681
ApaI	GGGCCC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	141, 328
ApoI	RAATTY	1 cut(s)	711
AsiGI	ACCGGT	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	146, 651
AspS9I	GGNCC	3 cut(s)	254, 681, 682
AsuHPI	GGTGA	2 cut(s)	59, 307
BaeGI	GKGCMC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	742
BanII	GRGCYC	2 cut(s)	543, 685
BbvI	GCAGC	2 cut(s)	153, 315
BccI	CCATC	3 cut(s)	350, 392, 499
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	62
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	2 cut(s)	147, 652
BisI	GCNGC	2 cut(s)	142, 329
BlsI	GCNGC	2 cut(s)	143, 330
Bme1390I	CCNGG	1 cut(s)	62
BmgT120I	GGNCC	3 cut(s)	254, 681, 682
BmiI	GGNNCC	4 cut(s)	256, 683, 684, 744
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	2 cut(s)	393, 574
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	2 cut(s)	393, 574
Bsa29I	ATCGAT	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	60, 462
BsaWI	WCCGGW	2 cut(s)	69, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 238, 463, 633
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	399, 569
Bse3DI	GCAATG	1 cut(s)	436
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	484
BseDI	CCNNGG	2 cut(s)	60, 462
BseGI	GGATG	2 cut(s)	510, 623
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	4 cut(s)	61, 238, 463, 633
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	399, 569
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	2 cut(s)	153, 315
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	255, 683
BshNI	GGYRCC	1 cut(s)	742
BshTI	ACCGGT	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	484
BsiSI	CCGG	2 cut(s)	70, 136
BslI	CCNNNNNNNGG	4 cut(s)	61, 238, 463, 633
BsnI	GGCC	2 cut(s)	255, 683
Bsp120I	GGGCCC	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	543, 685
Bsp143I	GATC	2 cut(s)	421, 568
BspANI	GGCC	2 cut(s)	255, 683
BspCNI	CTCAG	1 cut(s)	88
BspDI	ATCGAT	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	256, 683, 684, 744
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	399, 569
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	60, 462
BssMI	GATC	2 cut(s)	421, 568
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	301, 315, 450
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	510, 623
BstH2I	RGCGCY	2 cut(s)	147, 652
BstHHI	GCGC	2 cut(s)	146, 651
BstKTI	GATC	2 cut(s)	424, 571
BstMBI	GATC	2 cut(s)	421, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 433, 648
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	2 cut(s)	153, 315
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	255, 683
BsuTUI	ATCGAT	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	510, 623
BtsIMutI	CAGTG	2 cut(s)	306, 446
CaiI	CAGNNNCTG	2 cut(s)	147, 319
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	2 cut(s)	146, 651
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	254, 681, 682
ClaI	ATCGAT	1 cut(s)	484
Csp6I	GTAC	3 cut(s)	150, 357, 394
CspAI	ACCGGT	1 cut(s)	135
CviAII	CATG	4 cut(s)	415, 493, 536, 675
CviQI	GTAC	3 cut(s)	150, 357, 394
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	423, 570
DpnII	GATC	2 cut(s)	421, 568
DrdI	GACNNNNNNGTC	1 cut(s)	619
DseDI	GACNNNNNNGTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	2 cut(s)	543, 685
EcoO109I	RGGNCCY	2 cut(s)	681, 682
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	543, 685
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	418, 496, 539, 678
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FatI	CATG	4 cut(s)	414, 492, 535, 674
FauNDI	CATATG	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	142, 329
FokI	GGATG	2 cut(s)	517, 610
FriOI	GRGCYC	2 cut(s)	543, 685
Fsp4HI	GCNGC	2 cut(s)	142, 329
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	2 cut(s)	145, 650
GluI	GCNGC	2 cut(s)	142, 329
HaeII	RGCGCY	2 cut(s)	147, 652
HaeIII	GGCC	2 cut(s)	255, 683
HapII	CCGG	2 cut(s)	70, 136
HhaI	GCGC	2 cut(s)	146, 651
Hin1II	CATG	4 cut(s)	418, 496, 539, 678
Hin6I	GCGC	2 cut(s)	144, 649
HinP1I	GCGC	2 cut(s)	144, 649
HindIII	AAGCTT	1 cut(s)	696
HinfI	GANTC	7 cut(s)	73, 88, 175, 262, 322, 371, 730
HpaII	CCGG	2 cut(s)	70, 136
HphI	GGTGA	2 cut(s)	59, 307
Hpy188III	TCNNGA	1 cut(s)	415
HpyAV	CCTTC	5 cut(s)	103, 534, 672, 696, 756
HpyCH4III	ACNGT	3 cut(s)	301, 315, 450
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	7 cut(s)	44, 133, 141, 427, 441, 489, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 433, 648
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	418, 496, 539, 678
HspAI	GCGC	2 cut(s)	144, 649
Kzo9I	GATC	2 cut(s)	421, 568
LmnI	GCTCC	2 cut(s)	57, 726
Lsp1109I	GCAGC	2 cut(s)	153, 315
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	295, 584, 757
MalI	GATC	2 cut(s)	423, 570
MboI	GATC	2 cut(s)	421, 568
MboII	GAAGA	3 cut(s)	158, 563, 571
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	543, 685
MluCI	AATT	3 cut(s)	333, 711, 734
MlyI	GAGTC	5 cut(s)	67, 169, 256, 380, 739
MmeI	TCCRAC	2 cut(s)	243, 383
MnlI	CCTC	7 cut(s)	107, 210, 214, 244, 256, 531, 733
MseI	TTAA	2 cut(s)	124, 530
MspI	CCGG	2 cut(s)	70, 136
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	325, 433, 648
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	421, 568
NlaIII	CATG	4 cut(s)	418, 496, 539, 678
NlaIV	GGNNCC	4 cut(s)	256, 683, 684, 744
NmuCI	GTSAC	2 cut(s)	295, 757
PagI	TCATGA	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	88, 322
PflMI	CCANNNNNTGG	1 cut(s)	633
PinAI	ACCGGT	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	143, 330
PleI	GAGTC	5 cut(s)	67, 169, 256, 379, 738
PpsI	GAGTC	5 cut(s)	67, 169, 256, 379, 738
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	256, 683, 684, 744
PspOMI	GGGCCC	1 cut(s)	681
PspPI	GGNCC	3 cut(s)	254, 681, 682
PstI	CTGCAG	1 cut(s)	429
PstNI	CAGNNNCTG	2 cut(s)	147, 319
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	3 cut(s)	151, 358, 395
RsaNI	GTAC	3 cut(s)	150, 357, 394
SaqAI	TTAA	2 cut(s)	124, 530
SatI	GCNGC	2 cut(s)	142, 329
Sau3AI	GATC	2 cut(s)	421, 568
Sau96I	GGNCC	3 cut(s)	254, 681, 682
SchI	GAGTC	5 cut(s)	67, 169, 256, 380, 739
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	543, 685
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	425
SgrAI	CRCCGGYG	1 cut(s)	135
Sse9I	AATT	3 cut(s)	333, 711, 734
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	3 cut(s)	301, 315, 450
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	4 cut(s)	110, 484, 658, 738
TasI	AATT	3 cut(s)	333, 711, 734
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	88, 322
Tru1I	TTAA	2 cut(s)	124, 530
Tru9I	TTAA	2 cut(s)	124, 530
TscAI	CASTG	2 cut(s)	306, 453
TseFI	GTSAC	2 cut(s)	295, 757
TseI	GCWGC	2 cut(s)	141, 328
Tsp45I	GTSAC	2 cut(s)	295, 757
TspDTI	ATGAA	4 cut(s)	173, 431, 563, 691
TspRI	CASTG	2 cut(s)	306, 453
Van91I	CCANNNNNTGG	1 cut(s)	633
XapI	RAATTY	1 cut(s)	711
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.