RchiOBHm_Chr1g0334681

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000138
Physical Location & Seq
Forward (+)
26796453 .. 26797592
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56337

Sequence Viewer

Length: 948 bp
ATGGCACTACAAATCACTCTGTTCCGAAACCGCGGCTTTTCCATTGGAACGACGATGCACCATGCCGTCCTGGACGGCAAAAACTCATGCTCGTTTTTCAAAGCATGGGCTCACATATGCAAACAAGGAACTGGAATCGGATCATCATCTTCTTCTATTTCACTACCGGATAACCTCAACCCATTTCACGACCGAATGGCCATCCACGACCCAAAGGGGCTCGGAGAACTCTACTCGAATGAGTACCTCAACCGGGGAGGACCGAACAACAGGAGCGTGACGCATGACCACCCACCTAAAGCTCTTCCCCAAGACCTAGTTCGAGGGACCTTCGATTTCTCACGAGCAAATATTCAAACTCTTAGAGAGCATGTTGTGAAGACAACAAGGGTTGCTGATTCATCATCATCACTTCATTTGTCCACTTTTTCTCTAGGGTGTGCTTACACATGGATTTGCTTAGTCAAGGCCGAAGAAATAAAGGGAGAGAAGACGGCTATGATCTTTGGTGTGGACGCAAGGTCTCGCTTGGACCCTCCTGTACCGGAAACCTATTTTGGAAACTGCATAGTGGGCCGTGTAGCAGTGGCCGAAACGAAAGGCCTAACCGGTGAAGATGGGTTGGTCGTGGCCGTAAAGGCAATCACTGAGGCTTTGAGGAGTTTGGACGACGGGGTTTTCAATGGGGCAGAGCTTTGGGTTTCAAAATTTCTCGACTTTTCTCTGTATGATAAGGTATATTCGATTGCGGGTTCACAGCGGTTTGAGGTTTACGGTACTGATTATGGATGGGGAAGACCAAGGAAGATCGAGCTCGTTTCGATAGATAAGACTGATGCGGTTTCTCTTATGGATAGCAAAAATGGTGGTGGAGCTGTTGAGGTTGGGTTGGCTTTGAAGAAACCACAAATGGAGGTTTTTGCATCTCTATTTGCCAAAGGTTTCTGA

Protein Analysis

315

Amino Acids

34.39

Weight (kDa)

7.68

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 309 5.4e-32 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 33
AciI CCGC 5 cut(s) 31, 33, 749, 760, 839
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 3 cut(s) 198, 588, 630
AcsI RAATTY 1 cut(s) 707
AfaI GTAC 3 cut(s) 245, 543, 778
AfiI CCNNNNNNNGG 1 cut(s) 253
AgeI ACCGGT 1 cut(s) 608
AgsI TTSAA 5 cut(s) 100, 356, 682, 705, 898
AhdI GACNNNNNGTC 1 cut(s) 520
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 4 cut(s) 303, 335, 540, 572
AluBI AGCT 4 cut(s) 302, 694, 814, 875
AluI AGCT 4 cut(s) 302, 694, 814, 875
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 1 cut(s) 148
AoxI GGCC 6 cut(s) 198, 468, 574, 588, 601, 630
ApoI RAATTY 1 cut(s) 707
AsiGI ACCGGT 1 cut(s) 608
AspS9I GGNCC 4 cut(s) 260, 327, 532, 574
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 623
AvaII GGWCC 3 cut(s) 260, 327, 532
BalI TGGCCA 1 cut(s) 200
BanII GRGCYC 3 cut(s) 112, 222, 816
BauI CACGAG 1 cut(s) 342
BbsI GAAGAC 3 cut(s) 386, 497, 802
Bbv12I GWGCWC 1 cut(s) 816
BccI CCATC 3 cut(s) 209, 611, 783
BceAI ACGGC 5 cut(s) 50, 91, 510, 561, 617
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 2 cut(s) 317, 434
BglI GCCNNNNNGGC 1 cut(s) 638
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 71, 254
Bme18I GGWCC 3 cut(s) 260, 327, 532
BmeRI GACNNNNNGTC 1 cut(s) 520
BmgT120I GGNCC 4 cut(s) 260, 327, 532, 574
BmiI GGNNCC 2 cut(s) 328, 534
BmrFI CCNGG 2 cut(s) 71, 254
BmsI GCATC 3 cut(s) 45, 826, 932
BpiI GAAGAC 3 cut(s) 386, 497, 802
BpuMI CCSGG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 31, 253, 800
BsaWI WCCGGW 3 cut(s) 166, 544, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 145
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 31, 253, 800
BseGI GGATG 2 cut(s) 201, 794
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 639
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 673
Bsh1236I CGCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 6 cut(s) 200, 470, 576, 590, 603, 632
BshTI ACCGGT 1 cut(s) 608
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 4 cut(s) 167, 253, 545, 609
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 6 cut(s) 200, 470, 576, 590, 603, 632
Bso31I GGTCTC 1 cut(s) 528
Bsp1286I GDGCHC 3 cut(s) 112, 222, 816
Bsp143I GATC 3 cut(s) 140, 501, 807
BspACI CCGC 5 cut(s) 31, 33, 749, 760, 839
BspANI GGCC 6 cut(s) 200, 470, 576, 590, 603, 632
BspCNI CTCAG 1 cut(s) 640
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 328, 534
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 3 cut(s) 31, 253, 800
BssMI GATC 3 cut(s) 140, 501, 807
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 800
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 362, 460, 648
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 201, 794
BstFNI CGCG 1 cut(s) 33
BstKTI GATC 3 cut(s) 143, 504, 810
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 3 cut(s) 140, 501, 807
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 573, 638
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 69, 252
BstUI CGCG 1 cut(s) 33
BstV2I GAAGAC 3 cut(s) 386, 497, 802
BsuRI GGCC 6 cut(s) 200, 470, 576, 590, 603, 632
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 2 cut(s) 201, 794
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 591, 645
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 4 cut(s) 260, 327, 532, 574
Cfr42I CCGCGG 1 cut(s) 34
CseI GACGC 2 cut(s) 289, 524
Csp6I GTAC 3 cut(s) 244, 542, 777
CspAI ACCGGT 1 cut(s) 608
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 6 cut(s) 62, 87, 105, 284, 371, 450
CviQI GTAC 3 cut(s) 244, 542, 777
DdeI CTNAG 3 cut(s) 362, 460, 648
DpnI GATC 3 cut(s) 142, 503, 809
DpnII GATC 3 cut(s) 140, 501, 807
DriI GACNNNNNGTC 1 cut(s) 520
EaeI YGGCCR 3 cut(s) 198, 588, 630
Eam1104I CTCTTC 1 cut(s) 309
Eam1105I GACNNNNNGTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 800
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 3 cut(s) 112, 222, 816
Eco31I GGTCTC 1 cut(s) 528
Eco47I GGWCC 3 cut(s) 260, 327, 532
Eco53kI GAGCTC 1 cut(s) 814
EcoICRI GAGCTC 1 cut(s) 814
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 800
EcoT38I GRGCYC 3 cut(s) 112, 222, 816
ErhI CCWWGG 1 cut(s) 800
FaeI CATG 6 cut(s) 65, 90, 108, 287, 374, 453
FaqI GGGAC 1 cut(s) 340
FatI CATG 6 cut(s) 61, 86, 104, 283, 370, 449
FauI CCCGC 1 cut(s) 742
FauNDI CATATG 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 2 cut(s) 188, 801
FriOI GRGCYC 3 cut(s) 112, 222, 816
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 2 cut(s) 317, 434
GluI GCNGC 1 cut(s) 34
HaeIII GGCC 6 cut(s) 200, 470, 576, 590, 603, 632
HapII CCGG 4 cut(s) 167, 253, 545, 609
HgaI GACGC 2 cut(s) 289, 524
Hin1II CATG 6 cut(s) 65, 90, 108, 287, 374, 453
HinfI GANTC 2 cut(s) 135, 398
HpaII CCGG 4 cut(s) 167, 253, 545, 609
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 4 cut(s) 423, 514, 755, 772
Hpy188I TCNGA 4 cut(s) 26, 140, 224, 947
Hpy188III TCNNGA 3 cut(s) 188, 342, 713
Hpy8I GTNNAC 4 cut(s) 423, 514, 755, 772
Hpy99I CGWCG 2 cut(s) 55, 674
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4V TGCA 4 cut(s) 58, 120, 567, 923
HpyF10VI GCNNNNNNNGC 2 cut(s) 573, 638
HpyF3I CTNAG 3 cut(s) 362, 460, 648
Hsp92II CATG 6 cut(s) 65, 90, 108, 287, 374, 453
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 3 cut(s) 140, 501, 807
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 2 cut(s) 273, 872
LpnPI CCDG 9 cut(s) 56, 83, 117, 180, 256, 266, 552, 558, 622
LweI GCATC 3 cut(s) 45, 826, 932
MaeI CTAG 2 cut(s) 317, 434
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 142, 503, 809
MboI GATC 3 cut(s) 140, 501, 807
MhlI GDGCHC 3 cut(s) 112, 222, 816
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 1 cut(s) 707
MluNI TGGCCA 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 2 cut(s) 33, 760
MspI CCGG 4 cut(s) 167, 253, 545, 609
MspR9I CCNGG 2 cut(s) 71, 254
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 573, 638
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 116
NdeII GATC 3 cut(s) 140, 501, 807
NlaIII CATG 6 cut(s) 65, 90, 108, 287, 374, 453
NlaIV GGNNCC 2 cut(s) 328, 534
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 374
PceI AGGCCT 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 135, 398
PfoI TCCNGGA 1 cut(s) 69
PinAI ACCGGT 1 cut(s) 608
PkrI GCNGC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 328, 534
PspPI GGNCC 4 cut(s) 260, 327, 532, 574
PspPPI RGGWCCY 1 cut(s) 327
RsaI GTAC 3 cut(s) 245, 543, 778
RsaNI GTAC 3 cut(s) 244, 542, 777
SacI GAGCTC 1 cut(s) 816
SacII CCGCGG 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 309
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 3 cut(s) 140, 501, 807
Sau96I GGNCC 4 cut(s) 260, 327, 532, 574
ScrFI CCNGG 2 cut(s) 71, 254
SduI GDGCHC 3 cut(s) 112, 222, 816
SfaNI GCATC 3 cut(s) 45, 826, 932
Sfr303I CCGCGG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 34
SinI GGWCC 3 cut(s) 260, 327, 532
Sse9I AATT 1 cut(s) 707
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 5 cut(s) 31, 33, 749, 760, 839
SspI AATATT 1 cut(s) 352
SspMI CTAG 2 cut(s) 317, 434
SstI GAGCTC 1 cut(s) 816
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 69, 252
StyI CCWWGG 1 cut(s) 800
TaaI ACNGT 1 cut(s) 776
TaqI TCGA 7 cut(s) 236, 322, 333, 714, 743, 810, 821
TaqII GACCGA 2 cut(s) 207, 277
TasI AATT 1 cut(s) 707
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 2 cut(s) 135, 398
TscAI CASTG 2 cut(s) 591, 652
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 2 cut(s) 390, 404
TspRI CASTG 2 cut(s) 591, 652
VpaK11BI GGWCC 3 cut(s) 260, 327, 532
XapI RAATTY 1 cut(s) 707
XceI RCATGY 1 cut(s) 374
XspI CTAG 2 cut(s) 317, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.