Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

4921990 .. 4922793

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1060800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAGATCTAAACTCGGTGAAAGTGGTTGAGGTTTGCCAAGTAGCACCGCAACCAAGCACGCCGGACTCATCAGCCATCCCTGAGTCCCTTCCTCTAACCTTGTTCGACTTGCTCTGGCTAAGATTTGCACCCGTCCAACGCCTTTTCTTCTATGAAATCAATAACCCTAACTCCTCCGACACCAACTGCACCCATTCAACGCTCATTCCGAAACTCAAAACCTCACTCTCTCTCACCCTCCAACAATTTCTGCCTCTAGCCGGAAACGTCATATGGCCCAAAGAGTCCCCTAAACCTGTTCTCCGTTACGTCCGAGGAGACGGGGTTTTGCTCACCATAGCCGAGTCCGATTGTGATTTCCACCATATAGTTTCAACCAACAGCTTCAACATTGAAGCCAAAGAATACCATCCTCTCATACCCCAGATGCCCATGTCTCACGAAAAAGCCGCGGCCATTGCATTGCAGATCACCATATTTCCTAACCGTGGCTTCTGTATTGGAACATCCATGCACCATGCAATCCTAGACGGCAAGACCTCAACCATGTTTGTGAAAACATGGGCTCACATTTGCAAACACGAAGATTCCAATTTGTTGCCGGAACAGCTCAAACCTTTTTTAGACAGAAGCGTCATCAAAGACCCCGCCGGCCTAGAAGAGATCTACGCGAACCAATTTCGAAACATGGACCGGCCCGACAACAGAAGCTTGATGTCTTCCAAGTTTAAAGTTTTAGTACCGAGTTCAATTCGTGGCACGTTTGTGTTCACACGGGCAAATATAGAAGCACTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

268

Amino Acids

30.02

Weight (kDa)

7.12

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	21 - 217	9.8e-22	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	635
AccII	CGCG	2 cut(s)	455, 674
AciI	CCGC	4 cut(s)	50, 453, 455, 651
AcoI	YGGCCR	1 cut(s)	456
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	2 cut(s)	263, 491
AgsI	TTSAA	5 cut(s)	201, 378, 391, 398, 753
AleI	CACNNNNGTG	1 cut(s)	767
AluBI	AGCT	3 cut(s)	387, 613, 714
AluI	AGCT	3 cut(s)	387, 613, 714
Alw26I	GTCTC	2 cut(s)	315, 444
AoxI	GGCC	4 cut(s)	278, 456, 655, 698
AspS9I	GGNCC	3 cut(s)	279, 694, 699
AsuHPI	GGTGA	4 cut(s)	31, 229, 328, 466
AsuII	TTCGAA	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	714
BccI	CCATC	2 cut(s)	86, 420
BceAI	ACGGC	1 cut(s)	550
BcoDI	GTCTC	2 cut(s)	315, 444
BfaI	CTAG	3 cut(s)	260, 530, 659
BglII	AGATCT	2 cut(s)	7, 666
BisI	GCNGC	2 cut(s)	453, 456
BlsI	GCNGC	2 cut(s)	454, 457
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	3 cut(s)	279, 694, 699
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	685
BsaJI	CCNNGG	3 cut(s)	316, 453, 490
BsaXI	ACNNNNNCTCC	6 cut(s)	158, 188, 288, 312, 318, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 491
Bse118I	RCCGGY	2 cut(s)	653, 696
Bse3DI	GCAATG	2 cut(s)	459, 464
BseDI	CCNNGG	3 cut(s)	316, 453, 490
BseGI	GGATG	3 cut(s)	78, 412, 509
BseLI	CCNNNNNNNGG	2 cut(s)	263, 491
BseMI	GCAATG	2 cut(s)	459, 464
BseMII	CTCAG	2 cut(s)	75, 788
BseRI	GAGGAG	2 cut(s)	166, 333
BsgI	GTGCAG	1 cut(s)	175
Bsh1236I	CGCG	2 cut(s)	455, 674
BshFI	GGCC	4 cut(s)	280, 458, 657, 700
BsiSI	CCGG	5 cut(s)	65, 264, 605, 654, 697
BslFI	GGGAC	2 cut(s)	73, 274
BslI	CCNNNNNNNGG	2 cut(s)	263, 491
BsmAI	GTCTC	2 cut(s)	315, 444
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	73, 274
BsnI	GGCC	4 cut(s)	280, 458, 657, 700
Bsp119I	TTCGAA	1 cut(s)	685
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	7, 471, 666
BspACI	CCGC	4 cut(s)	50, 453, 455, 651
BspANI	GGCC	4 cut(s)	280, 458, 657, 700
BspCNI	CTCAG	2 cut(s)	76, 789
BspFNI	CGCG	2 cut(s)	455, 674
BspT104I	TTCGAA	1 cut(s)	685
BsrDI	GCAATG	2 cut(s)	459, 464
BsrFI	RCCGGY	2 cut(s)	653, 696
BssAI	RCCGGY	2 cut(s)	653, 696
BssECI	CCNNGG	3 cut(s)	316, 453, 490
BssMI	GATC	3 cut(s)	7, 471, 666
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	657
BstBI	TTCGAA	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	62, 655
BstDEI	CTNAG	3 cut(s)	84, 122, 797
BstDSI	CCRYGG	2 cut(s)	453, 490
BstF5I	GGATG	3 cut(s)	78, 412, 509
BstFNI	CGCG	2 cut(s)	455, 674
BstKTI	GATC	3 cut(s)	10, 474, 669
BstMAI	GTCTC	2 cut(s)	315, 444
BstMBI	GATC	3 cut(s)	7, 471, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 610
BstUI	CGCG	2 cut(s)	455, 674
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	2 cut(s)	7, 666
BstYI	RGATCY	2 cut(s)	7, 666
BsuRI	GGCC	4 cut(s)	280, 458, 657, 700
BtgI	CCRYGG	2 cut(s)	453, 490
BtsCI	GGATG	3 cut(s)	78, 412, 509
BtsIMutI	CAGTG	1 cut(s)	794
Cac8I	GCNNGC	2 cut(s)	62, 655
Cfr10I	RCCGGY	2 cut(s)	653, 696
Cfr13I	GGNCC	3 cut(s)	279, 694, 699
Cfr42I	CCGCGG	1 cut(s)	456
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	6 cut(s)	436, 514, 521, 550, 564, 691
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	3 cut(s)	84, 122, 797
DpnI	GATC	3 cut(s)	9, 473, 668
DpnII	GATC	3 cut(s)	7, 471, 666
DraI	TTTAAA	1 cut(s)	733
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	6 cut(s)	439, 517, 524, 553, 567, 694
FaqI	GGGAC	2 cut(s)	73, 274
FatI	CATG	6 cut(s)	435, 513, 520, 549, 563, 690
FauI	CCCGC	1 cut(s)	658
FauNDI	CATATG	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	453, 456
FokI	GGATG	3 cut(s)	65, 399, 496
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	453, 456
FspBI	CTAG	3 cut(s)	260, 530, 659
GluI	GCNGC	2 cut(s)	453, 456
HaeIII	GGCC	4 cut(s)	280, 458, 657, 700
HapII	CCGG	5 cut(s)	65, 264, 605, 654, 697
HgaI	GACGC	1 cut(s)	625
Hin1II	CATG	6 cut(s)	439, 517, 524, 553, 567, 694
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	5 cut(s)	68, 86, 287, 347, 590
HpaII	CCGG	5 cut(s)	65, 264, 605, 654, 697
HphI	GGTGA	4 cut(s)	31, 229, 328, 466
Hpy166II	GTNNAC	1 cut(s)	774
Hpy188I	TCNGA	4 cut(s)	181, 213, 317, 352
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	774
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	3 cut(s)	270, 312, 764
HpyCH4V	TGCA	7 cut(s)	131, 192, 464, 469, 517, 524, 579
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 610
HpyF3I	CTNAG	3 cut(s)	84, 122, 797
HpySE526I	ACGT	3 cut(s)	270, 312, 764
Hsp92II	CATG	6 cut(s)	439, 517, 524, 553, 567, 694
KroI	GCCGGC	1 cut(s)	653
KroNI	GCCGGC	1 cut(s)	655
KspI	CCGCGG	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	7, 471, 666
LpnPI	CCDG	9 cut(s)	78, 96, 103, 277, 312, 440, 618, 667, 710
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	3 cut(s)	260, 530, 659
MaeII	ACGT	3 cut(s)	270, 312, 764
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	3 cut(s)	9, 473, 668
MboI	GATC	3 cut(s)	7, 471, 666
MboII	GAAGA	4 cut(s)	142, 599, 674, 714
MflI	RGATCY	2 cut(s)	7, 666
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	4 cut(s)	248, 595, 680, 753
MlyI	GAGTC	4 cut(s)	62, 95, 296, 356
MmeI	TCCRAC	3 cut(s)	163, 204, 268
MroNI	GCCGGC	1 cut(s)	653
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	2 cut(s)	554, 767
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	5 cut(s)	65, 264, 605, 654, 697
MvnI	CGCG	2 cut(s)	455, 674
MwoI	GCNNNNNNNGC	2 cut(s)	461, 610
NaeI	GCCGGC	1 cut(s)	655
NdeI	CATATG	1 cut(s)	275
NdeII	GATC	3 cut(s)	7, 471, 666
NgoMIV	GCCGGC	1 cut(s)	653
NlaIII	CATG	6 cut(s)	439, 517, 524, 553, 567, 694
NmeAIII	GCCGAG	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	685
OliI	CACNNNNGTG	1 cut(s)	767
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	590
PkrI	GCNGC	2 cut(s)	454, 457
PleI	GAGTC	4 cut(s)	62, 94, 295, 355
PpsI	GAGTC	4 cut(s)	62, 94, 295, 355
PspPI	GGNCC	3 cut(s)	279, 694, 699
PsuI	RGATCY	2 cut(s)	7, 666
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	2 cut(s)	554, 767
SacII	CCGCGG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	2 cut(s)	453, 456
Sau3AI	GATC	3 cut(s)	7, 471, 666
Sau96I	GGNCC	3 cut(s)	279, 694, 699
SchI	GAGTC	4 cut(s)	62, 95, 296, 356
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	1 cut(s)	420
Sfr303I	CCGCGG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	685
SgrBI	CCGCGG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	2 cut(s)	554, 767
Sse9I	AATT	4 cut(s)	248, 595, 680, 753
SsiI	CCGC	4 cut(s)	50, 453, 455, 651
SspMI	CTAG	3 cut(s)	260, 530, 659
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	3 cut(s)	273, 315, 767
TaqI	TCGA	2 cut(s)	108, 685
TasI	AATT	4 cut(s)	248, 595, 680, 753
TauI	GCSGC	2 cut(s)	455, 458
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	1 cut(s)	801
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	801
VpaK11BI	GGWCC	1 cut(s)	694
XspI	CTAG	3 cut(s)	260, 530, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.