Rh2CG565000

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000138
Physical Location & Seq
Forward (+)
74636062 .. 74638105
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG565000.1

Sequence Viewer

Length: 615 bp
ATGATCTTCGGCGTGGACGCAAGGTCTCGCTTGGACCCTCCTGTACCGGAAACCTATTTTGGAAACTGCGTAGTGGGCCGTGTAGCAGTGGCCGAAACAAAAGGCCTGATTGGTGAAGATGGGTTGGTCGTGGCCGTAAAGGCAATCACTGAGGCCCTGAGGAGCTTGGACGACGGGGTTTTCCATGGGGCTGAGCTTTGGGTTTCTAAATTCATCGACTTTTCGCTGTATGATAAGGTATATTCAATTGCGGGTTCACAGCGGTTTGAGGTTTACGGTACTGATTATGGATGGGGAAGGCCAAAGAAGATCGAGCTCGTTTCGATAGATAAGACTGATGCGGTTTCTCTTATGGATAGCAAAAATGGTGGTGGAGCTATTGAGGTTGGGTTGGCTTTGAAGAAACCACAAATGGAGGCTTTTGCCTCTCTATTTGCCAAAGATCGATCCATCAACCTCCCTTTCAGCCCTCTATTTATGACCAATAAGATCACAGCCATGAAGTGTACCTTCATTGGGATCCAAGGGCTTGGATTTCCCAGAGGGTCTGTCTCTCCCAATTTTAATACTTGTATGCAAAGGCATTCTCGAAGGCTAGAAACATTCAAAGTCTAA

Protein Analysis

204

Amino Acids

22.37

Weight (kDa)

8.73

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 3 - 143 7.3e-20 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 251, 262, 341
AclWI GGATC 3 cut(s) 441, 514, 527
AcoI YGGCCR 2 cut(s) 90, 132
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 3 cut(s) 45, 280, 508
AfiI CCNNNNNNNGG 1 cut(s) 516
AgsI TTSAA 3 cut(s) 246, 400, 607
AhdI GACNNNNNGTC 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 4 cut(s) 165, 196, 316, 377
AluI AGCT 4 cut(s) 165, 196, 316, 377
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 30, 556
AlwI GGATC 3 cut(s) 441, 514, 527
AoxI GGCC 6 cut(s) 76, 90, 103, 132, 153, 299
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 3 cut(s) 34, 76, 154
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 34
AxyI CCTNAGG 1 cut(s) 158
BamHI GGATCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 3 cut(s) 113, 285, 458
BceAI ACGGC 2 cut(s) 63, 119
BcoDI GTCTC 2 cut(s) 30, 556
BfaI CTAG 1 cut(s) 596
BglI GCCNNNNNGGC 1 cut(s) 140
BlpI GCTNAGC 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 34
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgT120I GGNCC 3 cut(s) 34, 76, 154
BmiI GGNNCC 2 cut(s) 36, 521
BmsI GCATC 1 cut(s) 328
Bpu1102I GCTNAGC 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 184, 523
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse21I CCTNAGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 184, 523
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMII CTCAG 3 cut(s) 141, 149, 183
BseRI GAGGAG 1 cut(s) 175
BshFI GGCC 6 cut(s) 78, 92, 105, 134, 155, 301
BshVI ATCGAT 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 516
BsmAI GTCTC 2 cut(s) 30, 556
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 6 cut(s) 78, 92, 105, 134, 155, 301
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 6 cut(s) 3, 309, 442, 446, 489, 519
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 3 cut(s) 251, 262, 341
BspANI GGCC 6 cut(s) 78, 92, 105, 134, 155, 301
BspCNI CTCAG 3 cut(s) 142, 150, 184
BspDI ATCGAT 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 36, 521
BspPI GGATC 3 cut(s) 441, 514, 527
BspTNI GGTCTC 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 184, 523
BssMI GATC 6 cut(s) 3, 309, 442, 446, 489, 519
BssT1I CCWWGG 2 cut(s) 184, 523
Bst4CI ACNGT 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 150, 158, 192
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 296
BstKTI GATC 6 cut(s) 6, 312, 445, 449, 492, 522
BstMAI GTCTC 2 cut(s) 30, 556
BstMBI GATC 6 cut(s) 3, 309, 442, 446, 489, 519
BstMWI GCNNNNNNNGC 2 cut(s) 75, 140
BstX2I RGATCY 1 cut(s) 519
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 1 cut(s) 519
Bsu15I ATCGAT 1 cut(s) 445
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 6 cut(s) 78, 92, 105, 134, 155, 301
BsuTUI ATCGAT 1 cut(s) 445
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 147
Cfr13I GGNCC 3 cut(s) 34, 76, 154
ClaI ATCGAT 1 cut(s) 445
CseI GACGC 1 cut(s) 26
Csp6I GTAC 3 cut(s) 44, 279, 507
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 2 cut(s) 185, 499
CviQI GTAC 3 cut(s) 44, 279, 507
DdeI CTNAG 3 cut(s) 150, 158, 192
DpnI GATC 6 cut(s) 5, 311, 444, 448, 491, 521
DpnII GATC 6 cut(s) 3, 309, 442, 446, 489, 519
DriI GACNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 2 cut(s) 90, 132
Eam1105I GACNNNNNGTC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 184, 523
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 316
Eco81I CCTNAGG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 184, 523
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 184, 523
FaeI CATG 2 cut(s) 188, 502
FaiI YATR 8 cut(s) 186, 231, 241, 288, 353, 479, 500, 575
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FatI CATG 2 cut(s) 184, 498
FauI CCCGC 1 cut(s) 244
FokI GGATG 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 318
FspBI CTAG 1 cut(s) 596
HaeIII GGCC 6 cut(s) 78, 92, 105, 134, 155, 301
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 188, 502
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 4 cut(s) 16, 257, 274, 507
Hpy188III TCNNGA 1 cut(s) 588
Hpy8I GTNNAC 4 cut(s) 16, 257, 274, 507
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 291, 520, 585
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 140
HpyF3I CTNAG 3 cut(s) 150, 158, 192
Hsp92II CATG 2 cut(s) 188, 502
Kzo9I GATC 6 cut(s) 3, 309, 442, 446, 489, 519
LmnI GCTCC 2 cut(s) 162, 374
LpnPI CCDG 5 cut(s) 54, 60, 119, 170, 553
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 596
MalI GATC 6 cut(s) 5, 311, 444, 448, 491, 521
MboI GATC 6 cut(s) 3, 309, 442, 446, 489, 519
MboII GAAGA 3 cut(s) 128, 319, 412
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 3 cut(s) 209, 246, 559
MseI TTAA 1 cut(s) 564
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 583
MwoI GCNNNNNNNGC 2 cut(s) 75, 140
NcoI CCATGG 1 cut(s) 184
NdeII GATC 6 cut(s) 3, 309, 442, 446, 489, 519
NlaIII CATG 2 cut(s) 188, 502
NlaIV GGNNCC 2 cut(s) 36, 521
PceI AGGCCT 1 cut(s) 105
PctI GAATGC 1 cut(s) 583
Psp124BI GAGCTC 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 36, 521
PspPI GGNCC 3 cut(s) 34, 76, 154
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 3 cut(s) 45, 280, 508
RsaNI GTAC 3 cut(s) 44, 279, 507
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 564
Sau3AI GATC 6 cut(s) 3, 309, 442, 446, 489, 519
Sau96I GGNCC 3 cut(s) 34, 76, 154
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 497
Sse9I AATT 3 cut(s) 209, 246, 559
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 3 cut(s) 251, 262, 341
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 318
StuI AGGCCT 1 cut(s) 105
StyI CCWWGG 2 cut(s) 184, 523
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 5 cut(s) 216, 312, 323, 445, 589
TasI AATT 3 cut(s) 209, 246, 559
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 2 cut(s) 93, 154
TspDTI ATGAA 3 cut(s) 202, 502, 515
TspRI CASTG 2 cut(s) 93, 154
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.