Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

4921402 .. 4921881

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1060700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCAAGCCAAAAATGCAGTGATGGGATTTACTGTGGACGCTAGGTCTCGGTTAGACCCTCCTATACCTACAAACTATGTTGGGAATTGCTTAGTGCTTCGGATGGCAGTTGCAGAAACAAAAGCGCTCTTAGGAGGAGAGGGATTGGTTGTGGCGGTCGATGCGATCAGTGAGGCTGTAAAAAGTTTGGACGATGGGGCTTTGAATGGGGCTGAGGATTGGATTCCATTATTGTACTCTGTGGGTACTGATGAGAGTATATTTTCGACGGCCGGTTCACCTCGCTTTGAGATATATGATACGGATTTCGGATGGGGAAGACCGAAGAAGGTCGAGATTGTTTCCATAGAAGGGACGGGAGCTATGTCCATCTCGGAATCTAAAGATGGTGCTGGAGGTCTGGATATTGGGTTGGTAATGAAAAAACGTCACATGGAAATTTTTGCTTCTCTCTTTGCTAAAGGCCTTGAAAACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

160

Amino Acids

16.88

Weight (kDa)

4.7

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 150	2.2e-19	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	2 cut(s)	236, 247
AfeI	AGCGCT	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	205, 470
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	51
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	2 cut(s)	270, 463
ApoI	RAATTY	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	325
BbvCI	CCTCAGC	1 cut(s)	213
BccI	CCATC	6 cut(s)	16, 97, 188, 306, 377, 380
BceAI	ACGGC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	272
BseGI	GGATG	2 cut(s)	108, 317
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	270
Bsh1285I	CGRYCG	2 cut(s)	159, 273
BshFI	GGCC	2 cut(s)	272, 465
BsiEI	CGRYCG	2 cut(s)	159, 273
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	272, 465
Bso31I	GGTCTC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	272, 465
BspCNI	CTCAG	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssMI	GATC	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	91, 130, 213
BstF5I	GGATG	2 cut(s)	108, 317
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	165
BstMCI	CGRYCG	2 cut(s)	159, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 161
BstV2I	GAAGAC	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	272, 465
BtsCI	GGATG	2 cut(s)	108, 317
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 175
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	272
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	235, 246
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	7 cut(s)	8, 176, 200, 212, 272, 362, 465
CviKI_1	RGCY	7 cut(s)	8, 176, 200, 212, 272, 362, 465
CviQI	GTAC	2 cut(s)	235, 246
DdeI	CTNAG	3 cut(s)	91, 130, 213
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DriI	GACNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	270
FaeI	CATG	1 cut(s)	436
FaiI	YATR	8 cut(s)	65, 78, 260, 295, 297, 347, 365, 434
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	1 cut(s)	432
FokI	GGATG	2 cut(s)	115, 324
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	272, 465
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	436
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	2 cut(s)	223, 377
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	37, 278
Hpy188I	TCNGA	3 cut(s)	102, 311, 376
Hpy188III	TCNNGA	2 cut(s)	334, 401
Hpy8I	GTNNAC	2 cut(s)	37, 278
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	322, 344
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	4, 17, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 161
HpyF3I	CTNAG	3 cut(s)	91, 130, 213
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	1 cut(s)	436
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	3 cut(s)	286, 378, 386
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	2 cut(s)	330, 337
MluCI	AATT	2 cut(s)	85, 438
MnlI	CCTC	7 cut(s)	69, 128, 133, 166, 208, 291, 389
MspI	CCGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	14, 161
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	223, 377
RsaI	GTAC	2 cut(s)	236, 247
RsaNI	GTAC	2 cut(s)	235, 246
Sau3AI	GATC	1 cut(s)	165
SetI	ASST	8 cut(s)	47, 70, 283, 333, 364, 400, 430, 477
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	2 cut(s)	85, 438
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	3 cut(s)	159, 266, 333
TaqII	GACCGA	1 cut(s)	337
TasI	AATT	2 cut(s)	85, 438
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	223, 377
TscAI	CASTG	2 cut(s)	24, 175
TseFI	GTSAC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	24, 175
XapI	RAATTY	1 cut(s)	438
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.